Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_F04
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 258 2e-69
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 256 9e-69
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 253 7e-68
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 55 5e-08
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 55 5e-08
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 38 0.004
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.29
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 3.6
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 3.6
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 8.3
At4g00450.1 68417.m00062 expressed protein 27 8.3
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.3
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 8.3
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 258 bits (632), Expect = 2e-69
Identities = 114/170 (67%), Positives = 141/170 (82%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT RKG K RSLD+ ER+GY+KG V +IIHDPGRGAPLA V FR P++FK +KELF+A
Sbjct: 19 HTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVA 78
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIA 138
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHK 148
HNPD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHK
Sbjct: 139 HNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHK 188
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
+VKRN WP VRGVAMNPVEHP
Sbjct: 190 RVKRNSWPKVRGVAMNPVEHP 210
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQ 32
GGGNHQHIG ASTV+
Sbjct: 212 GGGNHQHIGHASTVR 226
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 256 bits (627), Expect = 9e-69
Identities = 112/174 (64%), Positives = 142/174 (81%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT RKG K RSLDY ER+GY+KG V +IIHDPGRGAPLA V FR P+++ +KELF+A
Sbjct: 20 HTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVA 79
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI
Sbjct: 80 AEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIA 139
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKXQGQ 136
HNP++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP LKAG AYHK + +
Sbjct: 140 HNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAK 193
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
K KRNCWP VRGVAMNPVEHP
Sbjct: 191 KAKRNCWPVVRGVAMNPVEHP 211
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQ 32
GGGNHQHIG ASTV+
Sbjct: 213 GGGNHQHIGHASTVR 227
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 253 bits (620), Expect = 7e-68
Identities = 111/170 (65%), Positives = 139/170 (81%)
Frame = -2
Query: 657 HTKKRKGAXKLRSLDYAERHGYIKGXVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 478
HT RKG K RSLD+ ER+GY+KG V +IIHDPGRGAPLA V FR P++FK +KELF+A
Sbjct: 19 HTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVA 78
Query: 477 PEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 298
EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIA 138
Query: 297 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHK 148
HNPD +R+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHK
Sbjct: 139 HNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHK 188
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -3
Query: 143 KVKRNCWPYVRGVAMNPVEHP 81
+VKRNCWP VRGVAMNPVEHP
Sbjct: 190 RVKRNCWPKVRGVAMNPVEHP 210
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1
Query: 76 GGGNHQHIGKASTVQ 32
GGGNHQHIG ASTV+
Sbjct: 212 GGGNHQHIGHASTVR 226
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -2
Query: 420 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 241
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 240 LPSSNRGMVGIVAGGGRIDKPILKAGRA 157
+ + R +G V+ K + KAG++
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS 145
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 122 PYVRGVAMNPVEHP 81
P VRGVAMNP +HP
Sbjct: 152 PKVRGVAMNPCDHP 165
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -2
Query: 420 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 241
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 240 LPSSNRGMVGIVAGGGRIDKPILKAGRA 157
+ + R +G V+ K + KAG++
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS 145
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 122 PYVRGVAMNPVEHP 81
P VRGVAMNP +HP
Sbjct: 152 PKVRGVAMNPCDHP 165
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 161 GHTTSXKVKRNCWPYVRGVA-MNPVEHP 81
G T +KRN W VRGVA MNPVEHP
Sbjct: 407 GLTKKLMIKRNMWAKVRGVAMMNPVEHP 434
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 361 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 519
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = -2
Query: 414 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 247
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 246 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 151
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 151 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 327
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 328 TCQTTSITHF-LFKIAHNGTLRHSSN 402
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 146 YLWYALPAFKIGL 184
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 349 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 525
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 526 VYNSQRCTSTRVMDYIL 576
+ NS + R+ D+ L
Sbjct: 1209 IINSVGLSVARITDFSL 1225
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 310 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 423
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 8.3
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = +2
Query: 203 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 382
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 383 PSGIAPTGITFPTSRVAFF 439
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,672,937
Number of Sequences: 28952
Number of extensions: 350303
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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