Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F03
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.23 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.30 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.5  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 452 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPLWLVKSP 616
           VL + M  +EP    P++     PGP      F  +N LP    PP+PL  + +P
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 206 YGSFQLFNKILLLM*RTGYCIYFHALLVCSLLHFCYYI 93
           Y +F LF   LLL+    Y  Y H L  C+ + F  ++
Sbjct: 242 YYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHL 279


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 194  QLFNKILLLM*RTGYCIYFHALLVCSLLH 108
            +L  K +++M  +G  I+   + +CSL+H
Sbjct: 1151 KLVIKAIIIMILSGCIIFTEGIWICSLIH 1179


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 452 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPL 598
           VL + M  +EP    P++     PGP      F  +N  P    PP+PL
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPTGFLCNNYPPLPQVPPLPL 185


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 508 HGENARSSVLKGEILVLEL 564
           H  N R    KGE+ VLE+
Sbjct: 384 HHANLRQKNQKGEVTVLEI 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,807
Number of Sequences: 336
Number of extensions: 3178
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)