Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_F01
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243...    29   2.4  
11_01_0612 + 4902197-4902929,4903443-4904071                           27   9.8  
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20...    27   9.8  
04_01_0550 - 7115728-7116065,7116793-7117843                           27   9.8  

>08_02_1034 +
           23823194-23823307,23823399-23823620,23823984-23824309,
           23824648-23824777,23825145-23825441,23825550-23825815,
           23827835-23828333,23828902-23828993,23829571-23829735,
           23829817-23830204,23830275-23830393,23830494-23830524,
           23830675-23830880,23830970-23831014,23831120-23831201,
           23832210-23832398,23834499-23834602,23834669-23834759,
           23835097-23835225,23835425-23835556,23835779-23835949,
           23836143-23836171,23836214-23836301,23836313-23836391,
           23836666-23836844
          Length = 1390

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 136 TPLSLTWGSFTHICYS*SLALAAEHELM 219
           TPL L WGSF   CY  SL    EH  M
Sbjct: 236 TPLQLQWGSFQSYCYR-SLIDGMEHIAM 262


>11_01_0612 + 4902197-4902929,4903443-4904071
          Length = 453

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2

Query: 644 SAAIIPXMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLAD 522
           +AA  P  V  ID+       AAA P  + PEAA  P L D
Sbjct: 25  AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64


>11_01_0027 -
           199196-199396,199514-199651,200207-200284,200419-200604,
           200754-200846,201665-201731,202374-202675
          Length = 354

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 157 PM*VRVAFSTPRWITVYFLDLETYLNNEIKNDL 59
           P+ V + +  P  + V +LDL TYL++   NDL
Sbjct: 204 PVPVLMLYGVPYLVFVMWLDLVTYLHHHGHNDL 236


>04_01_0550 - 7115728-7116065,7116793-7117843
          Length = 462

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 596 TVESDAAAVPEIKTPEAADAPKLA 525
           T+E+ A AVP +  P++AD P +A
Sbjct: 362 TMEAIATAVPMVAMPQSADQPTIA 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,433,563
Number of Sequences: 37544
Number of extensions: 198285
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)