Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E24
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    29   0.037
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    29   0.037
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    29   0.037
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    29   0.037
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 25   APSS-FLLAPLHRIFLCAAVGKSHFSCLTPSVCYVETWPAKY 147
            +PS+ FL+A     F+ A +    F C+ P + Y+ + P+ Y
Sbjct: 1002 SPSAIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 25   APSS-FLLAPLHRIFLCAAVGKSHFSCLTPSVCYVETWPAKY 147
            +PS+ FL+A     F+ A +    F C+ P + Y+ + P+ Y
Sbjct: 1002 SPSAIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 25   APSS-FLLAPLHRIFLCAAVGKSHFSCLTPSVCYVETWPAKY 147
            +PS+ FL+A     F+ A +    F C+ P + Y+ + P+ Y
Sbjct: 1002 SPSAIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 25   APSS-FLLAPLHRIFLCAAVGKSHFSCLTPSVCYVETWPAKY 147
            +PS+ FL+A     F+ A +    F C+ P + Y+ + P+ Y
Sbjct: 1002 SPSAIFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 103 LTPSVCYVETWPAKYDVKVQSINSN*GIVLD 195
           LT +VC+V    A +  K  SIN N  + LD
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINENLKMGLD 220


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 103 LTPSVCYVETWPAKYDVKVQSINSN*GIVLD 195
           LT +VC+V    A +  K  SIN N  + LD
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSINENLKMGLD 220


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 392  ENTGCCPVSCSNTLAARVSLSPDSP 466
            ENT C P + S    +   + PD P
Sbjct: 2280 ENTECHPDASSTMAPSTTPMVPDKP 2304


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 228 QNYPWRRSCHAA 263
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 228 QNYPWRRSCHAA 263
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 228 QNYPWRRSCHAA 263
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,958
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)