Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E24
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 246 1e-65
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 246 1e-65
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 182 2e-46
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 173 1e-43
02_02_0196 + 7685933-7685961,7686086-7686284 76 2e-14
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 47 2e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.29
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.51
01_06_0514 + 29955129-29955796,29955903-29956023 29 4.7
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 6.2
11_06_0648 + 25873779-25874279,25874418-25875548 28 6.2
08_02_0286 - 15326876-15328135 28 6.2
01_01_0582 - 4317216-4317731 28 6.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 246 bits (602), Expect = 1e-65
Identities = 119/158 (75%), Positives = 131/158 (82%)
Frame = -1
Query: 516 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 337
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 336 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 157
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 156 FYVVLGRPGFNVAHRRRKTGKVGFPHRRTKEDAMKWCQ 43
FYVVL R G+ VA RRR +VG HR TKEDAMKW Q
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQ 166
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 246 bits (602), Expect = 1e-65
Identities = 119/158 (75%), Positives = 131/158 (82%)
Frame = -1
Query: 516 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 337
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 336 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 157
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 156 FYVVLGRPGFNVAHRRRKTGKVGFPHRRTKEDAMKWCQ 43
FYVVL R G+ VA RRR +VG HR TKEDAMKW Q
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQ 166
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 182 bits (444), Expect = 2e-46
Identities = 98/160 (61%), Positives = 113/160 (70%), Gaps = 2/160 (1%)
Frame = -1
Query: 516 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 337
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 336 VHCTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIGIYG 163
+ TVRG KA ++LE GLK+ DN S T + + +YDPS GIYG
Sbjct: 69 CYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYG 125
Query: 162 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRRTKEDAMKWCQ 43
+DFYVVL R G+ VA RRR +VG HR TKEDAMKW Q
Sbjct: 126 MDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQ 165
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 173 bits (421), Expect = 1e-43
Identities = 85/109 (77%), Positives = 94/109 (86%)
Frame = -1
Query: 516 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 337
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 336 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 190
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 95 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = -1
Query: 189 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRRTKEDAMKWCQ 43
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR TKEDAMKW Q
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQ 59
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Frame = -1
Query: 516 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 346
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 345 KIAVHCTVRGAKAEEILER----GL-KVREY-ELRRDNFSATGNFGFGIQEH-IDLGIKY 187
I + T+RG L+R GL + ++ + ++F GNF G+++ + I Y
Sbjct: 158 TIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPY 217
Query: 186 DPSIGIYGLDFYVV 145
+ G+D +V
Sbjct: 218 EVGGKKNGMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -1
Query: 348 EKIAVHCTVRGAKAEEILERGLK 280
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -1
Query: 348 EKIAVHCTVRGAKAEEILERGLK 280
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>01_06_0514 + 29955129-29955796,29955903-29956023
Length = 262
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 233 LPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCC 409
L V + + R + S+ T +P+ + S LA V + + +R+ +DR +Y+ L C
Sbjct: 171 LEVCKGVPRSSKKSIFTIEPIGELPSTLAC-AVSRSCCYCRKRLQQDRDIYMYLGEKAFC 229
Query: 410 PVSC 421
C
Sbjct: 230 SNEC 233
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 447 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 283
+T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 305 VTEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 429 VLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEE 301
+LE LTG++P FSK + R E+ C G EE
Sbjct: 398 MLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEE 440
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 354 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 256
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 353 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 478
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,258,080
Number of Sequences: 37544
Number of extensions: 399286
Number of successful extensions: 1016
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -