Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E24
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              289   1e-78
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   1.6  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   3.6  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   8.4  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  289 bits (709), Expect = 1e-78
 Identities = 134/160 (83%), Positives = 147/160 (91%)
 Frame = -1

Query: 516 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 337
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61

Query: 336 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 157
           VHCTVRG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIKYDPSIGIYG+D
Sbjct: 62  VHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 121

Query: 156 FYVVLGRPGFNVAHRRRKTGKVGFPHRRTKEDAMKWCQQE 37
           F+VVLGRPGFN++ R+ K G+VGFPHR TK+DAMKW QQ+
Sbjct: 122 FFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 426 TPWRHESACHRIHQHRCSSKAF*YEDSALHF*NYPSEPSSPFYLSST 566
           T  R +S   R  + RCS+K+  +   A HF N+   P  PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 455 VTG*LVPPRCWSNSQDNSLYFP 390
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 221 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 376
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + +P+  T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +2

Query: 221 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIF---SLRRIPKDRTVYLA 388
           P P++P +  L    +  L T+KPL RIS++L+  ++Q +  +    L RIP D ++ ++
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPRIPSDLSL-VS 361

Query: 389 LENTGCCPVSCSNTLAARVSLSP 457
           L+     P S    L  R+  SP
Sbjct: 362 LQ----APPSYPYKLLPRIPTSP 380


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 261 RRDNFSATGNFGFGIQEHIDLGIKYD 184
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 278 TFKPLSRISSALAPRTVQWTAIFSLRRIPKDR 373
           T KP S +     P+  +WTA   L   PK+R
Sbjct: 389 TLKPRSILPDGRTPKNPEWTACVKLGMNPKER 420


>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 357 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 229
           RR +        RGA A EI ++G+K +  E RR+     G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,008,131
Number of Sequences: 59808
Number of extensions: 468485
Number of successful extensions: 1088
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)