Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E19
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    30   1.2  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    29   2.8  
At1g77640.1 68414.m09039 AP2 domain-containing transcription fac...    28   3.6  
At3g52870.1 68416.m05826 calmodulin-binding family protein conta...    28   4.8  
At2g04040.1 68415.m00385 MATE efflux family protein contains Pfa...    27   6.4  
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    27   8.4  

>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 266 RKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNSNALQ 90
           +K  +P+ + + K+K    KR   + S+     G    P T  PT  + +M+L     Q
Sbjct: 722 KKNPKPSPIQSKKKKNTSKKRNSTSMSSPLSKPGEHLEPETTSPTVEEDSMELGDTVNQ 780


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 349 SAPHSLRTLHPRKGPMYRRRQGT*ISHQGSPRDQLR*MHQSAKGWNRKDDWSPHQPR--S 176
           S P   R+  PR+G   R R     +   + R Q R +    + + ++  +S   P   S
Sbjct: 141 SPPRYSRSPPPRRGRRSRSRSRG-YNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGS 199

Query: 175 RILGGAEGQIRSHQR 131
           R+  G+ G+++SH R
Sbjct: 200 RVRSGSPGRVKSHSR 214


>At1g77640.1 68414.m09039 AP2 domain-containing transcription
           factor, putative Similar to DREB1A (GP:3660548)
           [Arabidopsis thaliana]
          Length = 244

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = -3

Query: 428 RLWPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRP 249
           R W S        N    IW  SY T  ++   Y A+      P+   NLN  +   + P
Sbjct: 49  RSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPK--ANLNFPNITTTSP 106

Query: 248 TALNAPKRKRVEPK 207
             +N  ++  + PK
Sbjct: 107 FLMNIDEKTLLSPK 120


>At3g52870.1 68416.m05826 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 456

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 317 SKRANVPQKARNLNLTSRKPSRPTAL 240
           S +ANVPQK+  L + S+K SR   L
Sbjct: 378 SPKANVPQKSMLLRINSKKQSRSLQL 403


>At2g04040.1 68415.m00385 MATE efflux family protein contains Pfam
           profile: PF01554 uncharacterized membrane protein family
          Length = 476

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 104 SSVSYFFVNSLVGSYLAFSSSQN 172
           ++VSY+ V + VG YLAFS   N
Sbjct: 407 NTVSYYLVGAPVGIYLAFSRELN 429


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 298 RRRQGT*ISHQGSPRDQLR*MHQSAKGWNRKDDWSPHQPRSRILGGAEGQIRS 140
           R R  T  +   + R+Q +   +  K W RK D++  + RS +   A  Q RS
Sbjct: 600 RTRSTTSEARVAAAREQAKSAAEETKEWKRKYDYAVGEARSALQKAASVQERS 652


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,115
Number of Sequences: 28952
Number of extensions: 265585
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)