Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E18
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   238   6e-64
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.43 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.00 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   1.7  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   5.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.3  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  238 bits (582), Expect = 6e-64
 Identities = 109/165 (66%), Positives = 135/165 (81%)
 Frame = -2

Query: 640 LSXYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINT 461
           L+ YKGK+V L FYPLDFTFVCPTEI+AFSE A +F +   +V+  STDS ++HLA+INT
Sbjct: 27  LADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINT 86

Query: 460 PRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVG 281
           PRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF+ID K  LRQITINDLPVG
Sbjct: 87  PRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVG 146

Query: 280 RSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 146
           RSV+E LRL+ AFQF ++HGEVCPANW  G+ TI  DTK  ++YF
Sbjct: 147 RSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNPEKYF 189


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 248 LHQPQGLLHRPPHGQVVDRDL-PEVLLVVDDEESSEGNARLLVQ 376
           L Q Q L  +    ++ D DL PEV  ++ +EES  G +R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 322 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 152
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 455 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 291
           +A R+  H H +   +   H  R  S   G  HS   +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 186 LAPGLQLAGHTSPCLSVNW 242
           L P  +L  HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 448 GGLGPMNIPLISDKS 404
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,020
Number of Sequences: 5004
Number of extensions: 36335
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)