Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E18
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 278 3e-75
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 239 9e-64
AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical... 69 2e-12
Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein... 29 2.1
Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein... 29 2.1
AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical ... 28 4.9
AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical ... 28 4.9
AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical ... 27 8.6
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 278 bits (681), Expect = 3e-75
Identities = 127/165 (76%), Positives = 142/165 (86%)
Frame = -2
Query: 640 LSXYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINT 461
LS YKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I VL ASTDS F+HLAWIN
Sbjct: 28 LSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAINTVVLAASTDSVFSHLAWINQ 87
Query: 460 PRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVG 281
PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGLFIID QNLRQITINDLPVG
Sbjct: 88 PRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLFIIDPSQNLRQITINDLPVG 147
Query: 280 RSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 146
RSV+ETLRLVQAFQF +KHGEVCPA W PG+ TIKP K +QEYF
Sbjct: 148 RSVDETLRLVQAFQFVEKHGEVCPAGWTPGSDTIKPGVKESQEYF 192
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 239 bits (586), Expect = 9e-64
Identities = 101/162 (62%), Positives = 134/162 (82%)
Frame = -2
Query: 631 YKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRK 452
YKGK++V+FFYPLDFTFVCPTEIIA+ ++A+EFR +G EV+ S DSHF+HLAW+NTPRK
Sbjct: 60 YKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRK 119
Query: 451 QGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSV 272
GGLG M+IPL++D + +I+ +GVLD+E+G+ +RGLF+ID +R T NDLPVGRSV
Sbjct: 120 DGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCNDLPVGRSV 179
Query: 271 EETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 146
+ETLR+++AFQF+DKHGEVCPA+W + TIKP ++EYF
Sbjct: 180 DETLRVLKAFQFSDKHGEVCPADWHEDSPTIKPGVATSKEYF 221
>AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical
protein Y38C1AA.11 protein.
Length = 231
Score = 69.3 bits (162), Expect = 2e-12
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Frame = -2
Query: 640 LSXYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW-- 470
L Y G+ +++LF +P DFT VC TE+ + A EFRK ++L S DS TH W
Sbjct: 22 LHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAK 81
Query: 469 -INTPRKQGGLGP-MNIPLISDKSHRISRDYGVLD------EETGIPFRGLFIIDDKQNL 314
IN+ + G + +I+D I + G++D E + R + + + L
Sbjct: 82 DINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGPDKKL 141
Query: 313 RQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 179
+ + GR+ E LR+V Q K PANW G I
Sbjct: 142 KSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANWIAGDNVI 186
>Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical
protein M106.5 protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -2
Query: 484 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 305
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 304 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 215
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 434 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 315
HE S K++ + L R G GHS+ T H R +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664
>Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -2
Query: 484 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 305
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 304 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 215
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -2
Query: 484 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 305
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 304 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 215
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical
protein C53C7.1b protein.
Length = 362
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 322 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 188
Q L+ I+ N + VG SV ++ + QF + GE C NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186
>AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical
protein C53C7.1a protein.
Length = 365
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 322 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 188
Q L+ I+ N + VG SV ++ + QF + GE C NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186
>AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical
protein W03F8.2 protein.
Length = 448
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 331 DDKQNLRQITINDLPVGRSVEETLRL-VQAFQFTDKHGEVCPANWRPGAKTIK 176
DDK+ + + N+ PV VEE + + V+A Q TD E+ +P K K
Sbjct: 94 DDKKEVEEKKENEKPVDVKVEEKVMVKVEATQNTDNSQELKAPEEKPKKKKKK 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,193
Number of Sequences: 27780
Number of extensions: 227722
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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