Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E16
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)           124   6e-29
SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   2e-24
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   3e-16
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            50   2e-06
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)            36   0.027
SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)             36   0.027
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)         29   3.1  
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_14132| Best HMM Match : dCMP_cyt_deam (HMM E-Value=7.6e-05)         28   4.1  
SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)                   27   7.2  
SB_20631| Best HMM Match : KH_2 (HMM E-Value=3.7)                      27   9.5  
SB_9850| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_9518| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_31408| Best HMM Match : ENTH (HMM E-Value=0)                        27   9.5  
SB_27769| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score =  124 bits (298), Expect = 6e-29
 Identities = 61/105 (58%), Positives = 72/105 (68%)
 Frame = -2

Query: 525 KFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDP 346
           KF  L TVF+KENGTVTA NASTLNDG           A++  V P+A IV FAD    P
Sbjct: 129 KFPSLKTVFKKENGTVTAANASTLNDGAAAVVLMTREAAEKNGVTPLASIVAFADAAVAP 188

Query: 345 IDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLL 211
           IDFPIAPA AIPK+L    +RK+D+ +WEINEAFS VA+AN  +L
Sbjct: 189 IDFPIAPAAAIPKVLRLAHLRKDDIDMWEINEAFSAVALANINVL 233


>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score =  108 bits (260), Expect = 2e-24
 Identities = 59/142 (41%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
 Frame = -2

Query: 450 DGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDV 271
           DG            K   + P+AR+V ++    DP    I P  +I   LE+ G   +D+
Sbjct: 20  DGAAALVLASEKAVKDHGLTPLARLVSYSINGVDPAIMGIGPVPSIKCALERAGKTLDDM 79

Query: 270 ALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSGARIVVHLCH-ALKKGE 94
            + E+NEAF+   +A QK LGLD SK NV+GGA++LGHP+G SGAR+ VHL H  ++KG 
Sbjct: 80  DIIEVNEAFAPQFLAVQKDLGLDMSKTNVNGGAIALGHPVGTSGARLTVHLTHEMMRKGL 139

Query: 93  K-GVASICNGGGGASSVMIEKM 31
           K  + S C GGG  S  M + M
Sbjct: 140 KYSIGSACIGGGQESFSMTDSM 161


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 49/113 (43%), Positives = 60/113 (53%)
 Frame = -2

Query: 486 GTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPK 307
           GTV+AGN S LNDG           A   NV P+AR+V +A    DP      P  A  K
Sbjct: 246 GTVSAGNTSGLNDGAAVVVLMPYAEANARNVSPLARVVSWAQAGVDPSVMGTGPIPATRK 305

Query: 306 LLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIG 148
            L K G + EDV L+E+NEAF+  + A  + LGLDPSK NV      L H +G
Sbjct: 306 ALSKAGWKVEDVDLFELNEAFAAQSCAVIRELGLDPSK-NVVDCETRLDHALG 357


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 33/96 (34%), Positives = 48/96 (50%)
 Frame = -2

Query: 525 KFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDP 346
           +  KL   F +  GT+TA N+S L DG           A  + +KP A +          
Sbjct: 79  QMAKLKPAFIRPFGTITAANSSFLTDGASACLVMCEEKALSMGLKPKAYL---------- 128

Query: 345 IDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSV 238
                +PA A PKLLEKTG++  D+ ++E +EAF+V
Sbjct: 129 -----SPAYATPKLLEKTGLKLSDIDVFEFHEAFAV 159


>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
          Length = 330

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
 Frame = -2

Query: 369 FADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGL-DPSK 193
           F +G C  +        A  +L +KTG+  +DV + E+++ FS   +   + LGL D  K
Sbjct: 9   FDEGNCIKLVGYDMTKTAAKRLFDKTGLSPKDVDVVELHDCFSTNELLTYEALGLCDEGK 68

Query: 192 -----------------INVHGGAVSLGHPIGMSG 139
                            +N  GG +S GHP+G +G
Sbjct: 69  AGEMVDRGDNTYGGKYVVNPSGGLISKGHPLGATG 103


>SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)
          Length = 331

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
 Frame = -2

Query: 369 FADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGL-DPSK 193
           F +G C  +        A  +L +KTG+  +DV + E+++ FS   +   + LGL D  K
Sbjct: 154 FDEGNCIKLVGYDMTKTAAKRLFDKTGLSPKDVDVVELHDCFSTNELLTYEALGLCDEGK 213

Query: 192 -----------------INVHGGAVSLGHPIGMSG 139
                            +N  GG +S GHP+G +G
Sbjct: 214 AGEMVDRGDNTYGGKYVVNPSGGLISKGHPLGATG 248


>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
          Length = 1740

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 59  PPPPLQIEATPF--SPFFKAWHRCTTMRAPDIPIG*PKLTAPPCTLIFD 199
           P  P  +EA P   +PF +   R  T + P + IG P+L   P ++I D
Sbjct: 225 PDTPKLMEALPILKTPFLRENPRLMTKKPPLVVIGKPRLVFFPYSVIVD 273


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -2

Query: 525 KFTKLSTVFQKENGTVTAGNAS 460
           +  KL  VF+K NGTV+AGNAS
Sbjct: 889 QLAKLPAVFKK-NGTVSAGNAS 909


>SB_14132| Best HMM Match : dCMP_cyt_deam (HMM E-Value=7.6e-05)
          Length = 423

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 255 NEAFSVVAVANQKLLGLDPSKINVHGGAVSL 163
           N+  SV+ + + + L +D S+ +VHGG + L
Sbjct: 29  NKVGSVIVLPSDRALSVDCSRNDVHGGVIGL 59


>SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)
          Length = 1056

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -2

Query: 309 KLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSGARI 130
           K L  TG  KED  L+E+ +   +  VA   L  +     N   GA+     I M G  +
Sbjct: 276 KKLATTGCTKED--LFEMEKKLEIKLVAVDALGNVMWDSGNDKRGAIPRSTRIWMCGRVM 333

Query: 129 VVHLCHALKKGEKGVA 82
           V H     + G+ G A
Sbjct: 334 VTHEGKPYRSGKDGAA 349


>SB_20631| Best HMM Match : KH_2 (HMM E-Value=3.7)
          Length = 481

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 377 IRAIGLTFNLLAASAVINTKAAAPSFNVEALPAV 478
           + A  +  N+ AA+ V+N  AAA   NV+A  AV
Sbjct: 100 VDAAAVVVNVDAAAVVVNVDAAAVVVNVDAAAAV 133


>SB_9850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +2

Query: 296 FSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLLAASAVINTKAAAPSFNVEALPA 475
           FSNN   A A  I  +  ++    N   +A     N  AA   INT AAA +   E +P 
Sbjct: 189 FSNNNTTAAANNINTTAAAN----NINTKAAANNINTTAAENNINTTAAAINNIGETVPT 244

Query: 476 VT 481
           +T
Sbjct: 245 IT 246


>SB_9518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +2

Query: 296 FSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLLAASAVINTKAAAPSFNVEALPA 475
           FSNN   A A  I  +  ++    N   +A     N  AA   INT AAA +   E +P 
Sbjct: 20  FSNNNTTAAANNINTTAAAN----NINTKAAANNINTTAAENNINTTAAAINNIGETVPT 75

Query: 476 VT 481
           +T
Sbjct: 76  IT 77


>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 1080

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 227  ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRA-IGLTFN 403
            AT T L  S ++   TSS   P     +GM     +G S  S    A PT  A +G++  
Sbjct: 805  ATPTNLMGSGMTM-PTSSIQQPAAGLGIGMQPMAGMGMSSMSSPMVAMPTSSAGMGMSTG 863

Query: 404  LLAASAV 424
            ++ AS V
Sbjct: 864  VMGASRV 870


>SB_27769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 377 IRAIGLTFNLLAASAVINTKAAAPSFNVEALPAV 478
           + A  +  N+ AA+ V+N  AAA   NV+A  AV
Sbjct: 118 VDAAAVVVNVDAAAVVVNVDAAAVVVNVDAAAAV 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,422
Number of Sequences: 59808
Number of extensions: 321451
Number of successful extensions: 915
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)