Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E14
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166...    28   7.0  
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499...    28   9.2  

>08_02_0604 -
           19215017-19215101,19215870-19216021,19216591-19216614,
           19216656-19216884,19217061-19217177,19219249-19219311,
           19219887-19220125
          Length = 302

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +2

Query: 473 LCFILDQF-VNSINGIFRGASIVSIVGGLRSLALAPTWSKRQLSFADQQGSGQNQHKYQS 649
           L F L+ F + SI G+ + ASI+  +GG   ++L   +  + L   D     QN+HK  S
Sbjct: 137 LMFRLEAFKLRSIPGVLKIASILLSIGGTMLISL---YKGKSLHLWDSIIQHQNEHK--S 191

Query: 650 ATHCLQ 667
           AT+ L+
Sbjct: 192 ATNQLR 197


>03_02_0984 +
           12947444-12947530,12949071-12949127,12949833-12949904,
           12950050-12950112,12950955-12951131,12951503-12951628,
           12951711-12951777,12952019-12952215,12952617-12952691,
           12954524-12954554,12954714-12954802,12955120-12955188,
           12955306-12955425,12955963-12956081,12956303-12956441,
           12956538-12957038,12957293-12957592,12957694-12957875,
           12958277-12958388,12958953-12959072
          Length = 900

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 547 RWPPISCPGPNLE*TSAELRRPTRQRTESTQVPKR 651
           R+ PISCP P +  +S+E+ +   +     + P+R
Sbjct: 235 RFSPISCPPPTISQSSSEIVKGQEKHEADLKYPQR 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,717
Number of Sequences: 37544
Number of extensions: 298346
Number of successful extensions: 599
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)