Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E12
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 178 4e-45
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 147 7e-36
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 144 7e-35
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 115 3e-26
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 101 5e-22
07_03_1039 - 23454130-23454552,23454859-23455536 35 0.059
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052... 29 2.9
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346... 29 5.2
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 28 9.0
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 178 bits (433), Expect = 4e-45
Identities = 90/245 (36%), Positives = 144/245 (58%), Gaps = 2/245 (0%)
Frame = -3
Query: 741 DDIMDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFN 562
DDIMD S R G PCW+R P+VG+ A ND +++ + + L+ +F+ Y+ + +LFN
Sbjct: 126 DDIMDNSQTRRGQPCWFRVPQVGLI-AVNDGIILRNHISRILQRHFKGKLYYVDLIDLFN 184
Query: 561 ETLWRTSMGQHLDHVTGNRXT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENV 388
E ++T+ GQ LD +T + D + + L + LPV+ LLL+ EN+
Sbjct: 185 EVEFKTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENL 244
Query: 387 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 208
D + ++I +E+GT FQ+QDD++DC+GD GK+GTDI++ KC+WL VQAL+R E
Sbjct: 245 DN--FGDVKNILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADE 302
Query: 207 AQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVR 28
Q+ + YG +P V ++K LY++L+L ++ E+ Y+ +I IE P +A +
Sbjct: 303 NQKHILFENYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNV 362
Query: 27 FKKLL 13
K L
Sbjct: 363 LKSFL 367
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 147 bits (357), Expect = 7e-36
Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 1/245 (0%)
Frame = -3
Query: 741 DDIMDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFN 562
DDI D + R CWY+ P VG++ A ND +L+ + +K F+ ++ + EL+N
Sbjct: 158 DDITDNAYTRRDNLCWYKLPTVGMS-AINDGVLLKCHVQAIIKRYFKEKFYFLDLMELWN 216
Query: 561 ETLWRTSMGQHLDHVTGNRXT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVD 385
E +T+MGQ LD +T + D + + + + LPV+ LLL
Sbjct: 217 EIGLQTAMGQMLDLITTHTGAKDLARYRIQGYRRIVKYKTSYYSFYLPVACALLL-NGAR 275
Query: 384 EKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEA 205
Y +++ +E+G FQIQDD++DCFGD GKVGTDI++ KC+WL VQA++ E
Sbjct: 276 LSDYVELKNVLIEMGVYFQIQDDYLDCFGDPEVIGKVGTDIEDYKCSWLIVQAMELANEN 335
Query: 204 QRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVRF 25
+ + YG S+P V +K +Y +L L I+ E +Y +++ I+ A R
Sbjct: 336 EMKILYENYGKSDPKCVAEVKSVYRELDLQDIFLEYESRVYKHLVSTIDAETDRAIRDIL 395
Query: 24 KKLLE 10
K L+
Sbjct: 396 KSFLK 400
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 144 bits (349), Expect = 7e-35
Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%)
Frame = -3
Query: 663 AFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNRXT-DYSS 487
A ND +++ + + L+ +FR Y + +LFNE ++T+ GQ LD +T + D +
Sbjct: 117 AINDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNK 176
Query: 486 FTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFID 307
+ + + LPV+ LLL+ D Y + +DI +++G FQ+QDD++D
Sbjct: 177 YNIGVHRRIVQYKTSYYSFYLPVACALLLSGE-DLTKYGAVEDILVKMGIYFQVQDDYLD 235
Query: 306 CFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYED 127
C+GD GK+GTDI++ KC+WL VQAL+R E+Q++V YG +PA V ++K LY +
Sbjct: 236 CYGDPKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRE 295
Query: 126 LHLPQIYKHQEKAMYDNIIRQIENIPIEAARVRFKKLL 13
L+L ++ E Y +I IE P A + K L
Sbjct: 296 LNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFL 333
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 115 bits (277), Expect = 3e-26
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 1/189 (0%)
Frame = -3
Query: 681 EVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHV-TGNR 505
+VG+ ND +++ + +K FR P ++ + E+++E +TS+GQ LD + T
Sbjct: 190 QVGLR-GINDGIILKCHILIMIKKYFREKPYFLDILEIWSEIALQTSLGQMLDLISTHTG 248
Query: 504 XTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQI 325
D + ++++ + LPV+ LLL+ E + +DI +E+G FQI
Sbjct: 249 ADDLAKYSIEGYRRIVKYKTAYYSFYLPVANALLLSGAKLED-FSGLKDILIEMGIYFQI 307
Query: 324 QDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERI 145
QDD++DCF D GK+GTDI++ KC+WL VQAL Q V YG + + V +
Sbjct: 308 QDDYLDCFADPNTIGKIGTDIEDHKCSWLIVQALGHADNNQIEVLHRNYGKKDSSSVSEV 367
Query: 144 KRLYEDLHL 118
KR Y L L
Sbjct: 368 KRTYAALDL 376
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 101 bits (243), Expect = 5e-22
Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Frame = -3
Query: 741 DDIMDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFN 562
DDIMD S R G PCW+R P+VG+ A ND L++ S + + FR Y+ + +LFN
Sbjct: 90 DDIMDNSQTRRGKPCWFRLPKVGLI-AINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFN 148
Query: 561 ETLWRTSMGQHLDHVTGNRXTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLL-AENVD 385
E +T+ GQ LD +T N L++ + LPV+ LLL E++D
Sbjct: 149 EVEIQTTSGQLLDQITTNEGRK----DLNKYRRIVEYKTAYYSFYLPVACALLLFDESLD 204
Query: 384 EKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK 277
Y + I +E+G FQ QDD++DCFG+ GK
Sbjct: 205 N--YAQVKHILVEMGVYFQSQDDYLDCFGEPEIIGK 238
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/68 (36%), Positives = 36/68 (52%)
Frame = -3
Query: 216 CTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA 37
C + K YG S+PA V ++K LY +LHL +++ E+ Y+ +I IE P EA
Sbjct: 229 CFGEPEIIGKENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAV 288
Query: 36 RVRFKKLL 13
R K L
Sbjct: 289 RAVLKSFL 296
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 35.1 bits (77), Expect = 0.059
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 420 VSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCT 244
V +G +L DE+I +S + IG +FQ+ DD +D + GK G D+ K T
Sbjct: 260 VVIGAILGGGSDEQI-ESLRMYARSIGLLFQVVDDILDVTKSSEELGKTAGKDLASDKTT 318
Query: 243 WLAVQALQRCTE 208
+ + L++ E
Sbjct: 319 YPKLLGLEKSRE 330
>09_04_0692 +
19502878-19502920,19505011-19505104,19505196-19505227,
19505833-19506074,19506758-19506994,19508283-19508396
Length = 253
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 22 FKAHAGGLYWYIFNLSYNIVVH 87
F+ GG+YWY F YN+V+H
Sbjct: 231 FRDFTGGMYWYAF--IYNVVLH 250
>08_02_0370 -
16333471-16333526,16333821-16333912,16334553-16334671,
16335152-16335226,16335328-16335393,16335507-16335563,
16335640-16335689,16335774-16335944,16337057-16337183,
16337658-16338017
Length = 390
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLA 235
L +++ E + + +++ + T++Q+ + ID G E+K ++ IQE C L
Sbjct: 215 LPIIVLEMPSVLLMAAIRNVHIARPTIYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELF 274
Query: 234 VQALQRCTEA 205
+ + TE+
Sbjct: 275 LTKVGDHTES 284
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 244 STFALLYICTNFTSFYFIT 300
STF L+Y+ +F SF+FIT
Sbjct: 467 STFGLVYLIYSFCSFHFIT 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,209,623
Number of Sequences: 37544
Number of extensions: 365919
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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