Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E12
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)   109   2e-24
SB_18719| Best HMM Match : UPF0023 (HMM E-Value=0)                     30   1.7  
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)                29   5.3  
SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)                 29   5.3  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score =  109 bits (263), Expect = 2e-24
 Identities = 52/106 (49%), Positives = 70/106 (66%)
 Frame = -3

Query: 387 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 208
           DE  + +A+ I LE+G  FQIQDD+ID FGD   TGKVGTDI+E KCTWL VQAL+R   
Sbjct: 171 DEASHANAKIILLEMGEFFQIQDDYIDVFGDASVTGKVGTDIEEGKCTWLVVQALKRANA 230

Query: 207 AQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNII 70
            Q T+ K   G ++     ++KR+Y +L+L Q++   E+A Y  II
Sbjct: 231 QQLTIIKENLGINDIEASAKVKRVYRELNLEQVFHEYEEASYQRII 276



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = -3

Query: 741 DDIMDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFN 562
           DDIMD S  R G PCWYR+PEVG   A ND ++I  ++F  LK + +    Y+ + ELF+
Sbjct: 107 DDIMDQSMTRRGQPCWYRQPEVG-NIAINDGIMIEQTVFRLLKKHIKHQSYYVDVVELFH 165

Query: 561 E 559
           E
Sbjct: 166 E 166


>SB_18719| Best HMM Match : UPF0023 (HMM E-Value=0)
          Length = 208

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 174 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQI-ENIPIEAARVRFKKLLEXTD 1
           +  P  V  I+R  +D+H   I     K     +IRQ+ EN+ I+ A++R + +L   D
Sbjct: 82  TKRPYPVGVIERAMKDIHYSVIPTRSSKQQALEVIRQLKENMQIDRAQMRLRLVLPGKD 140


>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
          Length = 803

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = -3

Query: 174 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVRFKKLLEXT 4
           +SE   + +++  Y+DL+   + +  +  + + I++ +E++  EAA    K L E T
Sbjct: 32  TSEKDKMNKLEDKYKDLYKKDLNEELKSVLDEEIMKALESLAEEAAMKDAKTLYEAT 88


>SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)
          Length = 349

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 112 LREVKVFVKSFYAFHMCWFTATITGFEYCT 201
           LR V VF+    A+  CW    I  F+Y T
Sbjct: 229 LRTVTVFILMLCAYLFCWLPNAIVRFQYST 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,394,856
Number of Sequences: 59808
Number of extensions: 444581
Number of successful extensions: 1026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)