Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E12
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP... 182 2e-46
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 177 5e-45
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP... 176 1e-44
At3g32040.1 68416.m04072 geranylgeranyl pyrophosphate synthase, ... 36 0.028
At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase, ... 33 0.15
At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase, ... 33 0.26
At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein ... 33 0.26
At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase, ... 32 0.46
At4g36810.1 68417.m05221 geranylgeranyl pyrophosphate synthase (... 31 1.1
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 31 1.1
At2g23800.1 68415.m02842 geranylgeranyl pyrophosphate synthase (... 30 1.4
At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase, ... 30 1.4
At3g21210.1 68416.m02680 universal stress protein (USP) family p... 29 2.5
At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase, ... 29 2.5
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 29 3.3
At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase (... 29 3.3
At1g61120.1 68414.m06886 terpene synthase/cyclase family protein... 29 4.3
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 28 5.7
At2g05880.1 68415.m00637 replication protein-related weak simila... 28 7.5
At5g60650.1 68418.m07612 expressed protein ; expression support... 27 9.9
>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 342
Score = 182 bits (444), Expect = 2e-46
Identities = 90/245 (36%), Positives = 145/245 (59%), Gaps = 2/245 (0%)
Frame = -3
Query: 741 DDIMDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFN 562
DDIMD S R G PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFN
Sbjct: 93 DDIMDNSVTRRGQPCWFRKPKVGMI-AINDGILLRNHIHRILKKHFREMPYYVDLVDLFN 151
Query: 561 ETLWRTSMGQHLDHVTG-NRXTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENV 388
E ++T+ GQ +D +T + D S ++L + LPV+ LL+A EN+
Sbjct: 152 EVEFQTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENL 211
Query: 387 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 208
+ + + + +++G FQ+QDD++DCF D GK+GTDI++ KC+WL V+AL+RC+E
Sbjct: 212 EN--HTDVKTVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSE 269
Query: 207 AQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVR 28
Q + YG +EP++V ++K LY++L L + EK Y+ + + IE +A +
Sbjct: 270 EQTKILYENYGKAEPSNVAKVKALYKELDLEGAFMEYEKESYEKLTKLIEAHQSKAIQAV 329
Query: 27 FKKLL 13
K L
Sbjct: 330 LKSFL 334
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 177 bits (432), Expect = 5e-45
Identities = 88/245 (35%), Positives = 141/245 (57%), Gaps = 2/245 (0%)
Frame = -3
Query: 741 DDIMDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFN 562
DDIMD S R G PCW+R P+VG+ A ND +L+ + + LK +FR P Y+ + +LFN
Sbjct: 135 DDIMDNSVTRRGQPCWFRVPQVGMV-AINDGILLRNHIHRILKKHFRDKPYYVDLVDLFN 193
Query: 561 ETLWRTSMGQHLDHVTG-NRXTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENV 388
E +T+ GQ +D +T D + ++L + LPV+ LL+A EN+
Sbjct: 194 EVELQTACGQMIDLITTFEGEKDLAKYSLSIHRRIVQYKTAYYSFYLPVACALLMAGENL 253
Query: 387 DEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTE 208
+ I +++ +++G FQ+QDD++DCF D GK+GTDI++ KC+WL V+AL+RC+E
Sbjct: 254 ENHI--DVKNVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSE 311
Query: 207 AQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVR 28
Q + YG +P++V ++K LY++L L ++ E Y+ + IE +A +
Sbjct: 312 EQTKILYENYGKPDPSNVAKVKDLYKELDLEGVFMEYESKSYEKLTGAIEGHQSKAIQAV 371
Query: 27 FKKLL 13
K L
Sbjct: 372 LKSFL 376
>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 247
Score = 176 bits (428), Expect = 1e-44
Identities = 87/242 (35%), Positives = 142/242 (58%), Gaps = 2/242 (0%)
Frame = -3
Query: 732 MDGSSVRXGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 553
MD S R G PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 1 MDNSVTRRGQPCWFRKPKVGMI-AINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVE 59
Query: 552 WRTSMGQHLDHVTG-NRXTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENVDEK 379
++T+ GQ +D +T + D S ++L + LPV+ LL+A EN++
Sbjct: 60 FQTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAGENLEN- 118
Query: 378 IYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR 199
+ + + +++G FQ+QDD++DCF D GK+GTDI++ KC+WL V+AL+RC+E Q
Sbjct: 119 -HTDVKTVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQT 177
Query: 198 TVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVRFKK 19
+ YG +EP++V ++K LY++L L + EK Y+ + + IE +A + K
Sbjct: 178 KILYENYGKAEPSNVAKVKALYKELDLEGAFMEYEKESYEKLTKLIEAHQSKAIQAVLKS 237
Query: 18 LL 13
L
Sbjct: 238 FL 239
>At3g32040.1 68416.m04072 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative identical to
gi:413730; similar to GB:P34802 from [Arabidopsis
thaliana] (Plant Physiol. 104 (4), 1469-1470 (1994))
Length = 360
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQ-DICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTW 241
LG ++ +E+I K + C IG +FQ+ DD ID + GK G D+ RK T+
Sbjct: 256 LGAIIGGGTEEEIQKLRKYGRC--IGLLFQVVDDIIDVTESTEELGKTAGKDVMARKLTY 313
Query: 240 LAVQALQRCTE 208
+ L+R E
Sbjct: 314 PRLIGLERSRE 324
>At3g14550.1 68416.m01843 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to SP|Q43133
Geranylgeranyl pyrophosphate synthetase, chloroplast
precursor (GGPP synthetase) (GGPS) [Includes:
Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10);
Farnesyltranstransferase (EC 2.5.1.29)] {Sinapis alba};
contains Pfam profile PF00348: Polyprenyl synthetase
Length = 360
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
LG+++ +E+I K + IG +FQ+ DD +D + GK G D+ K T+
Sbjct: 256 LGVIMGGGTEEEIEK-LRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYP 314
Query: 237 AVQALQRCTE 208
+ L+R E
Sbjct: 315 RLIGLERSKE 324
>At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to gi:413730;
similar to geranylgeranyl pyrophosphate synthase,
chloroplast precursor GB:P34802 from [Arabidopsis
thaliana]
Length = 357
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
LG ++ +E+I K + IG +FQ+ DD +D + GK G D+ K T+
Sbjct: 253 LGAIMGGGTEEEIEK-LRKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTYP 311
Query: 237 AVQALQRCTE 208
+ L+R E
Sbjct: 312 RLIGLERSRE 321
>At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 386
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 43 LYWYIFNLSYNIVVHRFFLMLVYLREVKVFVKSFYAFHMCWFTATITGFEYCTLC 207
LY ++F+ + VH L++V ++ V Y F + WF +T F +C
Sbjct: 192 LYVFVFSWVSMLEVHGKMLLMVITNDLVFVVLILYCFVVVWFVGGLTVFHLYLIC 246
>At3g14510.1 68416.m01837 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to
gi:9294375; similar to geranylgeranyl pyrophosphate
synthetase GB:P34802 [Arabidopsis thaliana]
Length = 284
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
+G ++ +E+I K + IG +FQ+ DD +D + GK G D+ K T+
Sbjct: 180 IGAIMGGGTEEEIEK-LRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYP 238
Query: 237 AVQALQRCTE 208
+ L+R E
Sbjct: 239 RLIGLERSRE 248
>At4g36810.1 68417.m05221 geranylgeranyl pyrophosphate synthase
(GGPS1) / GGPP synthetase / farnesyltranstransferase
identical to GI:413730 to geranylgeranyl pyrophosphate
synthase, chloroplast precursor GB:P34802 from
[Arabidopsis thaliana] synonymous with
farnesyltranstransferase
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
LG ++ D++I + + IG +FQ+ DD +D + GK G D+ K T+
Sbjct: 267 LGAIVGGGSDDEIER-LRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYP 325
Query: 237 AVQALQRCTE 208
+ L++ E
Sbjct: 326 KIMGLEKSRE 335
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = -3
Query: 396 ENVDEKIYKSAQDICLEIGT--MFQIQDDFIDCFGDEIKT---GKVGTDIQERKCTWLAV 232
E +D + K+ DI +EIG M + ++DF + + K + IQE C +
Sbjct: 163 EQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYML 222
Query: 231 QALQRCTEAQRTVFKACYGSSEPAHVERIK 142
++ + + + V + SSEP VE+++
Sbjct: 223 KSEECLKKERERVAHYLHSSSEPKLVEKVQ 252
>At2g23800.1 68415.m02842 geranylgeranyl pyrophosphate synthase
(GGPS2) (GGPS5) / GGPP synthetase /
farnesyltranstransferase identical to GB:U44876;
sequence disagrees at N-Terminus, sequence submitted has
been confirmed from three electropherograms.
Length = 376
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
LG ++ DE+I +S + IG +FQ+ DD +D + GK G D K T+
Sbjct: 272 LGAIIGGGSDEEI-ESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYP 330
Query: 237 AVQALQRCTEAQRTVFK 187
+ L++ E + + K
Sbjct: 331 KLIGLEKSKEFVKRLTK 347
>At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to gi:413730
to geranylgeranyl pyrophosphate synthase, chloroplast
precursor GB:P34802 from [Arabidopsis thaliana]
synonymous with farnesyltranstransferase
Length = 347
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
LG ++ DE++ K + IG +FQ+ DD +D + GK G D+ K T+
Sbjct: 243 LGAIVGGGSDEEVEKLRR-FARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYP 301
Query: 237 AVQALQR 217
+ L++
Sbjct: 302 KLMGLEK 308
>At3g21210.1 68416.m02680 universal stress protein (USP) family
protein / DC1 domain-containing protein contains Pfam
profiles PF03107: DC1 domain, PF00582: universal stress
protein family
Length = 686
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 154 HMCWFTATITGFEYCTLCFSTALQRLNCQPSTFALLYIC 270
H + T E+C++C RLNC FAL + C
Sbjct: 539 HPIYLIHESTAQEFCSICGQLIGHRLNCGECRFALCFGC 577
>At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to SP|P34802
Geranylgeranyl pyrophosphate synthetase, chloroplast
precursor (GGPP synthetase) (GGPS) [Includes:
Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10);
Farnesyltranstransferase (EC 2.5.1.29)] {Arabidopsis
thaliana}; contains Pfam profile PF00348: Polyprenyl
synthetase
Length = 360
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
LG+++ +++I K + IG +FQ+ DD +D + GK G D+ K T+
Sbjct: 256 LGVIMGGGTEQEIEK-LRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYP 314
Query: 237 AVQALQRCTE 208
+ L+ E
Sbjct: 315 RLIGLEGSRE 324
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -3
Query: 387 DEKIYKSAQDICLEIG----TMFQIQDDFIDC 304
DEK YKS+ +I + G T Q+ DDF DC
Sbjct: 44 DEKYYKSSSEIKCKDGSKKFTKAQLNDDFCDC 75
>At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase
(GGPS6) / GGPP synthetase / farnesyltranstransferase
identical to gi:2578821; similar to geranyl geranyl
pyrophosphate synthase GI:2578822 from [Arabidopsis
thaliana]
Length = 336
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 414 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWL 238
+G ++ DE+I + + +G MFQ+ DD +D + GK G D+ K T+
Sbjct: 232 VGAIMGGGSDEEIER-LKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYP 290
Query: 237 AVQALQRCTE 208
V + E
Sbjct: 291 KVMGVDNARE 300
>At1g61120.1 68414.m06886 terpene synthase/cyclase family protein
similar to S-linalool synthase GI:1491939 from [Clarkia
breweri][PMID: 8768373]
Length = 877
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 324 EFGTSFLFPSKCLEQIYKFFHPHFQLVVNQGKRVNCRCNMRPCI 455
+ G F+F S+C+E I F+ Q ++ + K V+ CN +P +
Sbjct: 168 KLGLHFVFSSRCIEMIKGMFYQR-QEIIQREKLVH-DCNYKPLL 209
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 411 GLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLA 235
G + V+ + + + +G FQI DD +D + GK G+D+ + T
Sbjct: 268 GAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPV 327
Query: 234 VQALQR 217
+ AL+R
Sbjct: 328 IFALER 333
>At2g05880.1 68415.m00637 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 256
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 339 FLFPSKCLEQIYKFFHPHFQLVVNQGKRVNCRCNMRPCIL 458
FLF + +E Y+ + F+L+ N GK++ C R C L
Sbjct: 150 FLFVCRQVETDYESRYVSFELLDNMGKKMKCYAVGRCCEL 189
>At5g60650.1 68418.m07612 expressed protein ; expression supported
by MPSS
Length = 147
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 315 NRPEFGTSFLFPSKCLEQIYKFFHPHFQL 401
+RP G ++ PS Q Y FFHP L
Sbjct: 26 SRPVHGPAYTNPSAFSPQAYDFFHPKSSL 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,437
Number of Sequences: 28952
Number of extensions: 307369
Number of successful extensions: 798
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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