Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E10
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 91 9e-19
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 29 4.2
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0) 29 4.2
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 28 9.8
SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 91.1 bits (216), Expect = 9e-19
Identities = 42/70 (60%), Positives = 50/70 (71%)
Frame = -1
Query: 780 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXX 601
D+ K S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE
Sbjct: 176 DVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLL 235
Query: 600 XLAPGGHLGR 571
L PGGHLGR
Sbjct: 236 KLCPGGHLGR 245
Score = 48.8 bits (111), Expect = 5e-06
Identities = 34/82 (41%), Positives = 43/82 (52%)
Frame = -1
Query: 483 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 304
NLP ++ + D LLK + R P R RA K NPL N ML+LNPYA KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276
Query: 303 KAILELRRRKNLKALADAEKSG 238
+L + RR+ K A A+K G
Sbjct: 277 AEMLTVERRRAAKEAALAKKRG 298
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = -1
Query: 510 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 364
TP++Q F + +++N D++RL S+ + ++ N RVI+++ N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 499 TKEELQPAPTEDGQH*PHTSSQV**DQEGPPCSQQTRDPCYTQIE--PAH*QQGDAETQS 326
++++ P P++ +H P S Q Q P SQQ R P +Q + P H QQ ETQS
Sbjct: 206 SQQQRHPRPSQQQRH-PRPSQQ----QRYPRPSQQQRQPRPSQQQRYPRHNQQQTPETQS 260
Query: 325 LRGRAEEES 299
E +S
Sbjct: 261 TTEIPETQS 269
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -1
Query: 375 RKLNPLTNNK-----AMLKLNPYAAVLKRKA-ILELRRRKNLKALADAEKSGLKLSKRNP 214
RK P NK A + Y A +R A +E+RR++ K L EK +L R
Sbjct: 87 RKSAPFATNKDVRHQAYQHIRDYEADKRRLADSIEIRRQEQAKTLE--EKKRQRLRSREA 144
Query: 213 AMKAEKLRERRR 178
AM+ ++ +ER R
Sbjct: 145 AMEEKRQKERLR 156
>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
Length = 491
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 396 KRVIRATRKLNPLTNNKAMLKLNPYAAVLK--RKAILELRRRKNLKALADAEKSGLKLSK 223
K V R TR+ NPL K + K P+ + K +K K + EK L +
Sbjct: 369 KPVERQTRRFNPLVIPKKLQKDLPFKSKPKDAKKRQRPSLESKRAVVMEPQEKKVYSLMQ 428
Query: 222 RNPAMKAEKLRERRRK 175
+ EKLR+R+ K
Sbjct: 429 QLYTANKEKLRKRKEK 444
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -1
Query: 435 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 331
+SD I K+ NK++ ++ L+ LTNNKA LKL
Sbjct: 27 QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +3
Query: 609 SAC*HSGAPHRGCCGRRVSDPDPC*RL*GAPYAGYDDGC 725
+AC + G PH G CG R C G Y+ C
Sbjct: 144 NACRNGGTPHAGRCGCRAGFTGTCCEHVGGAYSDCSHQC 182
>SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = -1
Query: 492 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAV 313
K N +P++ + L L D I + PNK +T + NP+ ++K PY +
Sbjct: 132 KQPNPSKPELVCSSLLSL--QDAINRAAVEPNKT---STTE-NPIERQSFLVKNRPYFTM 185
Query: 312 LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 196
L++ EL+++ L + + S PA A++
Sbjct: 186 LRKSYDKELKKKAVFLCLIVSNPKKIDESCPKPASAADE 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,800,388
Number of Sequences: 59808
Number of extensions: 394783
Number of successful extensions: 1402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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