Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E09
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   1.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   2.8  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    24   6.4  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    24   8.5  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = -2

Query: 253 PNSLSHPAGVERGL----PSPALCPAGTMNPWRLFINLFRMKLKNSCYAR 116
           P+S   P G  RG     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 121 ARSLKPTPPKQKHRRKCLLIIILYSHN 41
           A S+  T PK+KH R C  II  + H+
Sbjct: 14  ATSIDETAPKRKHVRSC--IIFTWDHH 38


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 215 AAIAGTVSCRNDESLASIYKLIQNEAEK 132
           A + G + C+N E ++ +Y+L   E  K
Sbjct: 334 AFLYGPLDCKNPEDISLLYQLATGEDSK 361


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 112 LKPTPPKQKHRRKCLLIIILYSHN 41
           L+PTPP ++H    L II L+S N
Sbjct: 57  LRPTPPDRRH-YSALDIIYLWSCN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,582
Number of Sequences: 5004
Number of extensions: 31219
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)