Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E09
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             27   3.5  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         27   6.2  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              26   8.1  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 256  KPNSLSHPAGV--ERGLPSPALCPAGTMNPWR 167
            KP     P G     G P P  CP G+ NP+R
Sbjct: 2015 KPYGTDCPNGTYCPEGTPIPVPCPKGSYNPYR 2046


>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 294 DSIPCFGLLHNGRSPTHFHIQLG-WKEGCHRRHCVLQER 181
           D+  CF    N  S  HFH+ +    +GC+ +HC+  ++
Sbjct: 109 DAAECF---ENILSRMHFHLAMNEHDDGCNAKHCISHQK 144


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 217 GLPSPALCPAGTMNPW 170
           G  +P  CP GT NPW
Sbjct: 232 GSATPIPCPTGTFNPW 247


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 242  FTSSWGGKRAAIAGTVSCRNDESL 171
            + SS GG +A  + T +C NDES+
Sbjct: 1299 YKSSMGGGKAVKSDTRTCENDESV 1322


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 145 MKLKNSCYARSLKPTPPKQKHRRKCLLIIILYSH 44
           M+  NSCYA       P   H    L I I+Y++
Sbjct: 791 MRAHNSCYAILDMSNSPHHSHAASTLCIYIIYTY 824


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 239 TSSWGGKRAAIAGTVSCRNDESLASIYKLIQ-NEAEKLLLC 120
           T +WG +R A    VSC+ +E ++++ + +   E    ++C
Sbjct: 8   TENWGEQREARFYAVSCQGNEDISTMLRTLSLKELNPHIIC 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,736
Number of Sequences: 59808
Number of extensions: 241892
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)