Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E09
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02475.1 68414.m00198 expressed protein                             31   0.31 
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic...    29   0.72 
At5g38400.1 68418.m04642 hypothetical protein                          27   2.9  
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ...    27   3.8  
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ...    27   3.8  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    27   5.0  
At5g48060.1 68418.m05938 C2 domain-containing protein contains I...    26   6.7  
At3g44020.1 68416.m04713 thylakoid lumenal P17.1 protein contain...    26   6.7  
At5g40760.1 68418.m04946 glucose-6-phosphate 1-dehydrogenase / G...    26   8.8  
At4g38190.1 68417.m05391 cellulose synthase family protein simil...    26   8.8  
At3g51390.1 68416.m05629 zinc finger (DHHC type) family protein ...    26   8.8  

>At1g02475.1 68414.m00198 expressed protein
          Length = 219

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 181 MNPWRLFINLFRMKLKNSCYARSLKPTPPKQKHRR 77
           ++ W L  N F   +K S  AR+L+PTP ++ H R
Sbjct: 121 LSRWSLKYNAFGQDIKYSWLARNLQPTPNQKIHWR 155


>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
           acid-induced protein 12 (IAA12) identical to SP|Q38830
           Auxin-responsive protein IAA12 (Indoleacetic
           acid-induced protein 12) {Arabidopsis thaliana}
          Length = 239

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 175 PWRLFIN-LFRMKLKNSCYARSLKPTPPKQKHRRK 74
           PWR+FIN + R+++  +  A  L P   +QK R++
Sbjct: 201 PWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQR 235


>At5g38400.1 68418.m04642 hypothetical protein
          Length = 151

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 142 KLKNSCYARSLKPTPPKQKHRRKCLLIIIL 53
           K + + Y  S+KP PPK   R+K L+II L
Sbjct: 42  KARMNVYKESMKPLPPK---RKKSLMIISL 68


>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1115

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -2

Query: 280 FWLAS*WPKPNSLSHPAGVERGL-PSPALCPAGTMNPWRLFINLFRMKLKNSCYARSLKP 104
           FW+   W K  +  H     R L P   L P G +       N   +KL        L+P
Sbjct: 626 FWI---WAKRQN--HTYRPNRPLTPQEELQPVGQIREASNKANTAELKLFLEVEHLDLRP 680

Query: 103 TPPKQKHRRKCLLIIILY 50
            PP +K +   LL   LY
Sbjct: 681 IPPPEKSKEDILLFFKLY 698


>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1116

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -2

Query: 280 FWLAS*WPKPNSLSHPAGVERGL-PSPALCPAGTMNPWRLFINLFRMKLKNSCYARSLKP 104
           FW+   W K  +  H     R L P   L P G +       N   +KL        L+P
Sbjct: 627 FWI---WAKRQN--HTYRPNRPLTPQEELQPVGQIREASNKANTAELKLFLEVEHLDLRP 681

Query: 103 TPPKQKHRRKCLLIIILY 50
            PP +K +   LL   LY
Sbjct: 682 IPPPEKSKEDILLFFKLY 699


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 197 VSCRNDESLASIYKLIQNEAEKLLLCQK 114
           VS   ++SL    KLI+ E E+  +C+K
Sbjct: 76  VSASYEQSLVDARKLIEKEMERFKICEK 103


>At5g48060.1 68418.m05938 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 223 PPQLDVKVSWASAI 264
           PP +D+K+SWA A+
Sbjct: 903 PPHMDMKLSWAEAV 916


>At3g44020.1 68416.m04713 thylakoid lumenal P17.1 protein contains
           Pfam PF00684 : DnaJ central domain (4 repeats);
           SP:Q9LXV9; PMID:11719511; supported by EST AI997589.
          Length = 159

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 120 PEALSRHHRNRN 85
           PE +S HHRNRN
Sbjct: 33  PELISHHHRNRN 44


>At5g40760.1 68418.m04946 glucose-6-phosphate 1-dehydrogenase / G6PD
           (ACG12) idential to glucose-6-phosphate 1-dehydrogenase
           (acg12) [Arabidopsis thaliana] GI:5732197
          Length = 515

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 123 MPEALSRHHRNRNTDENAF*SLYYILIITEMYP*SVLRYI 4
           + +A+S H  ++N+ E +   L+Y+ +   +YP SV + I
Sbjct: 124 LDKAISEHEISKNSTEGSSRRLFYLALPPSVYP-SVCKMI 162


>At4g38190.1 68417.m05391 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit gi:2827143 from
           [Arabidopsis thaliana], cellulose synthase-5
           (gi:9622882) from Zea mays
          Length = 1111

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 308 MYKFTILFLVLACFIMA 258
           +Y FT LFL+L CF+ A
Sbjct: 885 IYPFTSLFLILYCFLPA 901


>At3g51390.1 68416.m05629 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 340

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -2

Query: 202 ALCPAGTMNPW-RLFINLFR--MKLKNSCYARSLKPTPPKQKHRRKCLLIIILYSHN 41
           A CP     PW +L ++L+     ++N          PP+ KH   C   ++ + H+
Sbjct: 135 ASCPRRPPTPWGKLVLDLYPPGTSIRNLTCGYCHVEQPPRTKHCHDCDRCVLQFDHH 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,144,466
Number of Sequences: 28952
Number of extensions: 168735
Number of successful extensions: 465
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)