Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E08
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.9  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    25   8.5  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 106 LACNVHCVPXXXXXXXXXXXFDTHTYTLFCLLFKVYSQI-EYRLSLSLILF-VYSIVL 273
           L C+  C P           F     T+F L FK YS++  +R+  S IL+  + IVL
Sbjct: 91  LCCSFTCYPSILFASSLPIQFIALPPTVFLLFFKFYSRLFFFRIIPSHILYNSFRIVL 148


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 597 YPLDDLVKKTLSSPNPQVKAKVIPWDNCYRILQELYPDIMVD 472
           YP  +L ++ L +   ++    +P++N   ++  LY DI+ D
Sbjct: 235 YPDIELREEILDNACLKIVTDPVPYNNTVMVMPNLYGDIVSD 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,785
Number of Sequences: 5004
Number of extensions: 37498
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)