Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E08
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    27   7.8  

>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 172 THTYTLFCLLFKVYSQIEYRLSLSLILFVYSIVLEKSVIIEV 297
           TH   LFC +  ++  I   L++++IL    +V+  S +++V
Sbjct: 464 THLLVLFCFIVYIFVSIRGALNINIILSPDKLVIGDSPLLQV 505


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 231  IKFVFNIICL*YSLGEICDYRSLLVFDNRTMILFKIIIEINNYGRIST 374
            I+   +I+ + YS+GE     +L  FD  T+    I ++ NNY  +S+
Sbjct: 1119 IRTFLDILLIKYSVGEKGSRFTLATFDGTTVEYSCIFVQTNNYYDLSS 1166


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 290 IITDFSKTIL*TNNIKDKLNLYSI*L*TLNNKQKSVYVCVSNFYLIINFIYFLGTQCTL 114
           ++T F+KT L    I +K  L  +    L+ +  +++  +  F+L  N+IY +   C L
Sbjct: 151 LLTFFNKTQL---AINEKNGLVPV---FLDKQMTTIFFSIGGFFLFANYIYLITAYCFL 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,780
Number of Sequences: 27780
Number of extensions: 210284
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)