Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E08
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.3  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   7.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 461 FTLDTNFTIVNTIYRR 414
           F     F  VNTIYRR
Sbjct: 306 FAAMVEFAFVNTIYRR 321


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 430 LTIVKLVSKVKCLIIHHD 483
           +TIV L+  + C ++H D
Sbjct: 3   ITIVSLLCVIYCALVHAD 20


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 430 LTIVKLVSKVKCLIIHHD 483
           +TIV L+  + C ++H D
Sbjct: 3   ITIVSLLCVIYCALVHAD 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,017
Number of Sequences: 438
Number of extensions: 2751
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)