Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E08
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65920.1 68418.m08297 U-box domain-containing protein low sim...    29   1.8  
At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    29   3.1  

>At5g65920.1 68418.m08297 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 444

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 594 PLDDLVKKTLSSPNPQVKAKVIPWDN-----CYRILQELYPDIMVDN*TFHFRYQFYYSQ 430
           P+ D V  TL +     ++ ++ W N     C   +QEL+ D++  N T H     ++SQ
Sbjct: 72  PMQDPV--TLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTLHQLIYTWFSQ 129

Query: 429 YYL 421
            Y+
Sbjct: 130 KYV 132


>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 181 YTLFCLLFKVY-SQIEYRLSLSLILFVYSIVLEKSVIIEVY*SLTIEP*YCSKL 339
           YT   LL+K   SQ+++  ++S +L VY+  L +S +     +LT+ P Y  +L
Sbjct: 330 YTSAGLLYKPGGSQLQHATTISFLLLVYAQYLSRSSLSLNCGTLTVPPDYLRRL 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,301,250
Number of Sequences: 28952
Number of extensions: 173551
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)