Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E07
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    48   1e-06
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    41   1e-04
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    40   4e-04
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.9  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.4  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   8.5  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 34/87 (39%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = -3

Query: 575 LHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTG-----ETCKRGAPIKCNTNIRLQ 411
           LHSH   Y  GS QQ VT     D NN  W+  P  G     E      PI   + +RL 
Sbjct: 353 LHSHVQTYPEGSEQQQVTGYHHKDGNN-EWMFVPTHGVAYNYEENDPMNPILNGSVVRLI 411

Query: 410 HVATKKNLHSHFFTSPLSGNQ-EVSCY 333
           H  T +NLH+H   +PL+    EVS Y
Sbjct: 412 HPFTNRNLHTHKIPAPLNKRMYEVSGY 438


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
 Frame = -3

Query: 575 LHSHDVKYGS-------GSGQQSVTAVEVSDDNNSHWLVRPMTGET----CKRGAPIKCN 429
           LHSH  KY          SG Q VT  +  D+NN +W++ P          K   P+K  
Sbjct: 356 LHSHPEKYPIPYDDGRISSGGQQVTGYQFDDENN-YWMILPADHYDPPIEAKLNVPVKNM 414

Query: 428 TNIRLQHVATKKNLHSHFFTSPLSGNQE 345
             I+L HV T  +L +H   SP     E
Sbjct: 415 DYIKLHHVGTNTDLMTHDVASPYHPTNE 442


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = -3

Query: 575 LHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG--APIKCNTNIRLQHVA 402
           LHS ++ Y  G+ QQ ++ V+   + N+ W++     +   R     +K  + +RL+HV 
Sbjct: 331 LHSSELLYPEGTEQQIISLVD-EPNQNALWIIEHEHSQDNNRSNIELLKDGSVVRLRHVM 389

Query: 401 TKKNLHSHFFTSPLSGNQ---EVSCY 333
           T + LHSH     +S N    E S Y
Sbjct: 390 TGRALHSHEHKPIVSNNDWQLEASAY 415


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 228 SINMSKFYWCISPPVVIVADHSPIV 302
           S+   +    ISP V++ ++HSP+V
Sbjct: 180 SLQFQQALLAISPSVIVTSEHSPLV 204


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 509 SDDNNSHWLVRPMTGET 459
           SDD+N+H+ V   TGET
Sbjct: 495 SDDDNTHFYVNLYTGET 511


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 446 APIKCNTNIRLQHVATKKNLHSHFFTS-PLSGNQEVSCY 333
           AP+  NT++ +    T     S FFTS P + ++  S Y
Sbjct: 123 APVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSY 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,420
Number of Sequences: 5004
Number of extensions: 48209
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)