Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E07
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 143 1e-34
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 71 5e-13
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 31 0.53
03_03_0267 + 16041974-16042549 31 0.93
11_06_0354 - 22605903-22606145,22606239-22606442,22607227-226074... 29 2.8
10_08_0598 + 19093417-19094220 28 6.5
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 6.5
12_01_0621 - 5115642-5115881,5116029-5116229,5116333-5116528,511... 27 8.7
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874 27 8.7
07_03_0846 - 21983581-21986055 27 8.7
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 143 bits (346), Expect = 1e-34
Identities = 74/168 (44%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Frame = -3
Query: 602 LIXTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTN 423
L+ K RLHSHDV YGSGSGQQSVT DD+NS+W+VRP + K+G I+ +
Sbjct: 45 LMHEKTKHRLHSHDVPYGSGSGQQSVTGFPEVDDSNSYWIVRPSPDSSAKQGDAIETGSI 104
Query: 422 IRLQHVATKKNLHSHFFTSPLSGNQEVSCY-XXXXXXXXXXDNWTVVCNNDYWRRDTPVK 246
IRLQH+ T+K LHSH SPLSGN EVSC+ + W++D V+
Sbjct: 105 IRLQHMRTRKWLHSHLHASPLSGNLEVSCFGGDGQSDTGDYWRLEIEGGGKLWKQDQKVR 164
Query: 245 FRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 102
RHVDTG YL + + R GQ E+ GV + A W A+EG+++
Sbjct: 165 LRHVDTGGYLHSHNKKYNRLGGGQQEVCGVREK-RAENIWLATEGVYL 211
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -3
Query: 584 KLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNT 426
K RLHSHDV YGSGSGQQSVT+ DD+NS+W+VRP + K+G PI T
Sbjct: 345 KFRLHSHDVPYGSGSGQQSVTSFPNVDDSNSYWIVRPQPDTSAKQGDPITHGT 397
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = -3
Query: 269 WRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 102
WR++ ++ RHVDTG YL R + R GQ E+ GV + W A+EG+++
Sbjct: 425 WRQNQKIRLRHVDTGGYLHSHDRKYTRIAGGQQEVCGVGDKRPDNV-WLAAEGVYL 479
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 227 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 96
G + G+G F P+ G +VG ++ G Y + S G++VHP
Sbjct: 106 GPFGNGAGTPFAVPVLNNGSVVGFFARAGPYLE---SIGIYVHP 146
>03_03_0267 + 16041974-16042549
Length = 191
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 227 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 96
G + G+G F P+ G G +VG + GAY + + G++V+P
Sbjct: 145 GPFGYGAGTPFSVPVRGDGGVVGFFVRAGAYLE---AIGVYVNP 185
>11_06_0354 -
22605903-22606145,22606239-22606442,22607227-22607490,
22607945-22608142,22608238-22608498,22608977-22609183,
22610004-22610207,22610455-22610520,22610717-22610949,
22610982-22611051,22611109-22611136,22611243-22611367,
22611950-22612051
Length = 734
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 227 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHPGELLPHQ 75
G Y G F PI +G IVG + G Y D + G++V+P + H+
Sbjct: 383 GPYGQVGGTPFQIPIQIKGSIVGFFGRVGWYVD---AFGIYVNPNQDATHE 430
>10_08_0598 + 19093417-19094220
Length = 267
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -1
Query: 367 HPSLAIKRYHVMETMRAKETVETIGLWSATMTTGGEIHQ*NLDMLILDRILQAPGEHLVV 188
H A H E R V + W+AT +GGE + + +++ +L A GE L +
Sbjct: 13 HARTASHPCHYPELARLDGGVRELMSWTATSRSGGE---GSSGLALVEAVLAALGEVLEL 69
Query: 187 PSMVKA 170
P V A
Sbjct: 70 PVAVAA 75
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 228 SINMSKFYWCISPPVVIVADHSPIVSTVSFALIV 329
SIN +WC S V+V D + T+ F L V
Sbjct: 499 SINQLLEFWCKSHGAVLVDDKEYVTKTILFTLTV 532
>12_01_0621 -
5115642-5115881,5116029-5116229,5116333-5116528,
5116747-5117033
Length = 307
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 227 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 96
G + G F P+ IVG + G Y D + G++VHP
Sbjct: 266 GPFGRQEGTPFSVPVQNNSTIVGFFGRSGKYLD---TVGIYVHP 306
>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
Length = 118
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 275 DYWRRDTPVKFRHVDTGSYLA 213
DYW RD PV+ V G+ LA
Sbjct: 65 DYWWRDVPVRLPGVSCGAVLA 85
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 494 SHWLVRPMTGETCKRGAPIKCNTN 423
S W ++ TG CKR P++C TN
Sbjct: 323 SDWDLQDFTGG-CKRNVPLQCQTN 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,667,864
Number of Sequences: 37544
Number of extensions: 349755
Number of successful extensions: 817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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