Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E07
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)                   105   4e-23
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)
          Length = 271

 Score =  105 bits (251), Expect = 4e-23
 Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
 Frame = -3

Query: 443 PIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXDNWTVVCNNDYWR 264
           PIKC+  IRLQH+ATK+NLHSH F SP+S NQEVS +          D+W VVC+   W 
Sbjct: 3   PIKCDETIRLQHLATKRNLHSHHFQSPISHNQEVSAF-GEGGNGDNLDDWVVVCSKKNWE 61

Query: 263 RDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVG-----VSSQYGAYTDW 126
           R   V+FRH  T  YL  +G  FGRPI+GQ E+ G     VS+++    DW
Sbjct: 62  RKDTVRFRHKITEMYLHITGDQFGRPIHGQREVSGFNYPDVSNEWKTMEDW 112


>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 56  TLYVQHADVVIVLQDEQRDLHLLASQCKHHIVNSLRQSRL 175
           +L + H D + V   +  D+ LLA QCK H++  L + RL
Sbjct: 134 SLLLFHLDRLDVDVSQTMDVLLLAKQCKLHVLKQLLEMRL 173


>SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 225 SSINMSKFYWCISPPVVIVADHSPIVSTVSFA 320
           S  N+S++YWC   PV++V    PI +++S A
Sbjct: 4   SGANISQYYWCQYQPVLLV----PISASISGA 31


>SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 225 SSINMSKFYWCISPPVVIVADHSPIVSTVSFA 320
           S  N+S++YWC   PV++V    PI +++S A
Sbjct: 50  SGANISQYYWCQYQPVLLV----PISASISGA 77


>SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 557  KYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHS- 381
            K   G+ Q +  AVE +++  +++  R    + C+   PI+ N  I L H+ ++  L S 
Sbjct: 1052 KMSEGTAQDA-EAVEAAEEETAYFRTRAAILDECQLSHPIEAN-GIDLCHLYSRSRLTSL 1109

Query: 380  HFFTSPLS 357
               T PLS
Sbjct: 1110 SVATLPLS 1117


>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 177 TIDGTTKCSPGACKIRSSINMSKFYWCISPP 269
           ++ GT  C+   C + + +     Y+CI PP
Sbjct: 20  SVQGTGLCASNPCTLGACMESPSGYYCICPP 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,278,176
Number of Sequences: 59808
Number of extensions: 399723
Number of successful extensions: 919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)