Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E07
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical...   173   8e-44
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    32   0.36 
AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    29   2.6  

>AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical
           protein R12E2.13 protein.
          Length = 206

 Score =  173 bits (421), Expect = 8e-44
 Identities = 86/160 (53%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
 Frame = -3

Query: 578 RLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTNIRLQHVAT 399
           RLHSHDVKYGSGSGQQSVTAV+ SDD NSHW + P     C RG  IKC   IRL+H+ T
Sbjct: 42  RLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKHLTT 101

Query: 398 KKNLHSHFFTSPLS-GNQEVSCYXXXXXXXXXXDNWTVVCNNDYWRRDTPVKFRHVDTGS 222
              LHSH FT+PLS  +QEVS +          D+WTV+CN D W      K RH  TGS
Sbjct: 102 GTFLHSHHFTAPLSKQHQEVSAF-GSEAESDTGDDWTVICNGDEWLESEQFKLRHAVTGS 160

Query: 221 YLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 102
           YL+ SG+ FGRPI+GQ E+VG  S  G  + W+ +EG+++
Sbjct: 161 YLSLSGQQFGRPIHGQREVVGTDSITGG-SAWKVAEGIYI 199


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 159 SDNLALTIDGTTKCSPGACKIRSSINMSKFYWCISPPVVIVADHSPIVSTV 311
           S    L  D  T C  G C+      M   Y+C  PP++I+ +++PIV  V
Sbjct: 554 SPKTCLGWDDNTTCPQGKCQKA----MDGVYYCCRPPMMILQNNAPIVPQV 600


>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 212 GSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHPGELLPHQ 75
           G G   G P  G G   G    Y  Y  + A+ G  ++PG+  P Q
Sbjct: 20  GGGHGGGYPQEGYGAAAGGYGGYDPYNPYGAAGGYGMYPGQGYPPQ 65


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 212 GSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHPGELLPHQ 75
           G G   G P  G G   G    Y  Y  + A+ G  ++PG+  P Q
Sbjct: 20  GGGHGGGYPQEGYGAAAGGYGGYDPYNPYGAAGGYGMYPGQGYPPQ 65


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 12  SXSHMVLWSSFKLL*LCMYSMLMW**FSRMNKETFTCLPVSVSTI 146
           S S  +LW+S   + +CM+ ML      ++NK + +C+    ST+
Sbjct: 197 SWSTTILWTSISAISICMFLMLACMIMKKLNKMS-SCMSKKTSTL 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,106
Number of Sequences: 27780
Number of extensions: 295192
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)