Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E07
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 244 LDMLILDRILQAPGEHLVVPSMVKARLSE*VHNMVLTLTGKQVKVSLFI 98
           LD +    IL  PG+HL V +  ++ L E +   V T     V + L I
Sbjct: 741 LDDIASMEILYKPGDHLGVFACNRSELVEAILKRVQTPFDPDVPIELQI 789


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 184 SMVKARLSE*VHNMVLT--LTGKQVKVSLFILENYYHISMLYIQSYNSLKLDQS 29
           S+ K+ +   V+ +V++  LTG     ++     +YHI ++ I S +S   D++
Sbjct: 86  SVCKSLIERQVYAVVVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKN 139


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 337 HDTS*LPERGEVKKC 381
           H+   LPERGE+  C
Sbjct: 303 HEFQILPERGELGHC 317


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 476 GEPASDYCYHQRPQPPSQTAVLIQTHTLHHANEV 577
           G PA+     Q P   S  A+    H  HH  E+
Sbjct: 446 GSPATTAAPPQLPTEESVDALCNTLHHWHHCPEI 479


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 198 IWSSHQWSRRD 166
           IW+ H W RR+
Sbjct: 177 IWTPHGWMRRN 187


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 210 LRANIWSSHQW 178
           L  N+W  H+W
Sbjct: 67  LTTNVWLEHEW 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 241 DMLILDRILQAP 206
           DM +L R+LQAP
Sbjct: 617 DMPVLKRVLQAP 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,003
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)