Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E07
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25110.1 68415.m03004 MIR domain-containing protein similar t...   140   5e-34
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    29   3.1  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    29   3.1  
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    28   4.1  

>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score =  140 bits (340), Expect = 5e-34
 Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
 Frame = -3

Query: 602 LIXTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTN 423
           L+    K RLHSHDV YGSGSGQQSVT      D+NS+W+V+P+ G T K+G  +K    
Sbjct: 45  LMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGAT 104

Query: 422 IRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXDNWTVVC--NNDYWRRDTPV 249
           IRLQH+ T+K LHSH   SP+SGN EVSC+          D+W ++   +   W++D  V
Sbjct: 105 IRLQHMKTRKWLHSHLHASPISGNLEVSCF-GDDTNSDTGDHWKLIIEGSGKTWKQDQRV 163

Query: 248 KFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 102
           + +H+DT  YL    + + R   GQ E+ G+  +  A   W A+EG+++
Sbjct: 164 RLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREK-KADNIWLAAEGVYL 211


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 242 RHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTD 129
           RH  TGSY +G      + +  QG   G    YG Y D
Sbjct: 106 RHGYTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMD 143


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 242 RHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTD 129
           RH  TGSY +G      + +  QG   G    YG Y D
Sbjct: 108 RHGYTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMD 145


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
           factor-related similar to CCAAT-box-binding
           transcription factor (CCAAT-binding factor) (CBF)
           (Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
           musculus]
          Length = 1056

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 50  IITLYVQHADVVIVLQDEQRDLHL---LASQCKHHIVNSLRQSRLDH*WDDQMFARSLQD 220
           +  L   H ++  V+ DE         L  + K+H VN L Q RL H  +D   A+ L D
Sbjct: 381 LTNLLADHPNMKAVVIDEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGEDPKVAKRLID 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,002
Number of Sequences: 28952
Number of extensions: 268896
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)