Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E06
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               173   1e-43
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                77   1e-14
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                54   1e-07
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  32   0.37 
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         29   4.6  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  173 bits (421), Expect = 1e-43
 Identities = 75/130 (57%), Positives = 100/130 (76%)
 Frame = -3

Query: 604 EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 425
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 424 GNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTGNAGGR 245
           GN+ A +D G   + + D+ ++L G +S++GR++VVHAD DDLG GG+E SKTTG+AGGR
Sbjct: 84  GNVVAGDD-GKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142

Query: 244 IACGVIGLAK 215
           +ACGVIG+ +
Sbjct: 143 LACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = -3

Query: 439 HVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTG 260
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GG+ELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 259 NAGGRIACGVI 227
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 33/49 (67%)
 Frame = -3

Query: 466 HGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLV 320
           HG P    RH+GDLGNIEA +  G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 25/93 (26%), Positives = 43/93 (46%)
 Frame = -3

Query: 550 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQD 371
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 370 SQISLHGPNSIIGRTLVVHADPDDLGLGGNELS 272
           +Q SL G  SI+G     H + +  GLG N+ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 27/110 (24%), Positives = 46/110 (41%)
 Frame = -3

Query: 607 DEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGD 428
           D +S +  +  + G  +  HG      GDN +   +  +    ++  HG   S+      
Sbjct: 360 DNQSSLGGNQSILGDNQSSHGNEKSGLGDNQSSLGNDQSSHGNDQSSHGNNQSS------ 413

Query: 427 LGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNE 278
           LG  ++I   G  + SI D+Q SL    S +G   +   D +   LG N+
Sbjct: 414 LGGNQSI--LGGNQSSIGDNQSSLGNDQSSLGGDQISLGD-NQSSLGDNQ 460


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
 Frame = -3

Query: 664 KAVCVLRGDVSGTVFFDQQDEKSP----VVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 497
           KA   + G + GTV F Q    +     + ++G  + L+   H   V   G+    C + 
Sbjct: 58  KATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNTV 116

Query: 496 --GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDAGVTKVSIQDSQISLHGPNSII 335
             G  ++P+       S+A +    VGDL G    I+   ++ V   DS + L G + I 
Sbjct: 117 ALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIF 175

Query: 334 GRTLVV 317
           GRTLV+
Sbjct: 176 GRTLVL 181


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 517  TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 401
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 640 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHG--FHVHEFGDNTN 512
           DVSG+V  +Q   +S   V+  V G     HG  F +H    NT+
Sbjct: 44  DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,925,986
Number of Sequences: 59808
Number of extensions: 417327
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)