Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E06
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 191 5e-49
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 191 5e-49
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 191 5e-49
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 191 5e-49
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 175 2e-44
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 162 2e-40
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 161 6e-40
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 161 6e-40
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 29 4.1
AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 29 4.1
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 4.1
Z73427-9|CAA97805.1| 213|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z68303-11|CAA92643.1| 213|Caenorhabditis elegans Hypothetical p... 28 5.4
Z27079-3|CAA81590.1| 332|Caenorhabditis elegans Hypothetical pr... 28 7.1
X68384-1|CAA48455.1| 332|Caenorhabditis elegans protein ( C.ele... 28 7.1
S75262-1|AAC60520.1| 332|Caenorhabditis elegans p34cdc2 kinase ... 28 7.1
AF129109-1|AAD37119.1| 332|Caenorhabditis elegans CDK1 ortholog... 28 7.1
Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 27 9.4
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 27 9.4
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 27 9.4
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 191 bits (465), Expect = 5e-49
Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Frame = -3
Query: 673 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 497
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 496 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVV 317
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 316 HADPDDLGLG-GN--ELSKTTGNAGGRIACGVIGLA 218
HA DDLG G G+ E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 191 bits (465), Expect = 5e-49
Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Frame = -3
Query: 673 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 497
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 496 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVV 317
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 316 HADPDDLGLG-GN--ELSKTTGNAGGRIACGVIGLA 218
HA DDLG G G+ E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 191 bits (465), Expect = 5e-49
Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Frame = -3
Query: 673 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 497
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 496 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVV 317
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 316 HADPDDLGLG-GN--ELSKTTGNAGGRIACGVIGLA 218
HA DDLG G G+ E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 191 bits (465), Expect = 5e-49
Identities = 90/156 (57%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Frame = -3
Query: 673 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 497
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 496 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVV 317
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 83 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 141
Query: 316 HADPDDLGLG-GN--ELSKTTGNAGGRIACGVIGLA 218
HA DDLG G G+ E SK TGNAG R ACGVI LA
Sbjct: 142 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 177
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 175 bits (426), Expect = 2e-44
Identities = 87/153 (56%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Frame = -3
Query: 664 KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 488
+AV VLRG V GTV+ Q+ E GE++GL+ G HGFH+H++GD+T+GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 487 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 308
FNP K +HGG S VRHVGDLGN+EA D GV K+ D +SL G N++IGR++VVH D
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 307 PDDLGLGGN---ELSKTTGNAGGRIACGVIGLA 218
DDLG G + E S TGNAG R ACGVI LA
Sbjct: 143 RDDLGQGIDDKAEESLKTGNAGARAACGVIALA 175
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 162 bits (394), Expect = 2e-40
Identities = 78/146 (53%), Positives = 100/146 (68%)
Frame = -3
Query: 640 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 461
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 460 GPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGN 281
P + RH+GDLGNIE+ +G T +S+ DS SL G SIIGR++V+H DDLG G +
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 280 ELSKTTGNAGGRIACGVIGLAKI*IL 203
+ SKTTGNAG R+ACG IG+ + IL
Sbjct: 156 DQSKTTGNAGSRLACGTIGIVEERIL 181
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 161 bits (390), Expect = 6e-40
Identities = 76/139 (54%), Positives = 96/139 (69%)
Frame = -3
Query: 640 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 461
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 460 GPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGN 281
P + RH+GDLGNIE+ +G T +S+ DS SL G SIIGR++V+H DDLG G +
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 280 ELSKTTGNAGGRIACGVIG 224
+ SKTTGNAG R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 161 bits (390), Expect = 6e-40
Identities = 76/139 (54%), Positives = 96/139 (69%)
Frame = -3
Query: 640 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 461
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 460 GPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGN 281
P + RH+GDLGNIE+ +G T +S+ DS SL G SIIGR++V+H DDLG G +
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 280 ELSKTTGNAGGRIACGVIG 224
+ SKTTGNAG R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 667 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 488
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 884 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 943
Query: 487 FN 482
F+
Sbjct: 944 FS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 667 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 488
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 675 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 734
Query: 487 FN 482
F+
Sbjct: 735 FS 736
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 484 LITHVKPEDLDVLASELSKMGGHHNGR 510
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 494 LITHVKPEDLDVLASELSKMGGHHNGR 520
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 728
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 131 LITHVKPEDLDVLASELSKMGGHHNGR 157
>AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 792
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 204 LITHVKPEDLDVLASELSKMGGHHNGR 230
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 325 LVVHADPDDLGLGGNELSKTTGNAGGR 245
L+ H P+DL + +ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>Z73427-9|CAA97805.1| 213|Caenorhabditis elegans Hypothetical
protein F58B3.9 protein.
Length = 213
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -3
Query: 295 GLGGNELSKTTGNAGGRIACGVIGLAKI*ILSFFIYWAWYYNI**LHGILNTNFCLNFTY 116
G GN + T A GR+ CG+ G+ K+ ++ + + NI ++ NT+ NF
Sbjct: 42 GFQGNGAGELTYEAKGRLICGLTGVDKVRVV-LWDRFRGRENI--IYDETNTDVVGNFR- 97
Query: 115 INKKPSVFDGNI 80
+ + FDGN+
Sbjct: 98 LRATRNGFDGNL 109
>Z68303-11|CAA92643.1| 213|Caenorhabditis elegans Hypothetical
protein F58B3.9 protein.
Length = 213
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -3
Query: 295 GLGGNELSKTTGNAGGRIACGVIGLAKI*ILSFFIYWAWYYNI**LHGILNTNFCLNFTY 116
G GN + T A GR+ CG+ G+ K+ ++ + + NI ++ NT+ NF
Sbjct: 42 GFQGNGAGELTYEAKGRLICGLTGVDKVRVV-LWDRFRGRENI--IYDETNTDVVGNFR- 97
Query: 115 INKKPSVFDGNI 80
+ + FDGN+
Sbjct: 98 LRATRNGFDGNL 109
>Z27079-3|CAA81590.1| 332|Caenorhabditis elegans Hypothetical
protein T05G5.3 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 478 EKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISL 356
E +D G PS+AVR + L ++ G+ V +Q++++ L
Sbjct: 56 ESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENRLFL 96
>X68384-1|CAA48455.1| 332|Caenorhabditis elegans protein (
C.elegans mRNA for p34cdc2 homologue. ).
Length = 332
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 478 EKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISL 356
E +D G PS+AVR + L ++ G+ V +Q++++ L
Sbjct: 56 ESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENRLFL 96
>S75262-1|AAC60520.1| 332|Caenorhabditis elegans p34cdc2 kinase
protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 478 EKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISL 356
E +D G PS+AVR + L ++ G+ V +Q++++ L
Sbjct: 56 ESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENRLFL 96
>AF129109-1|AAD37119.1| 332|Caenorhabditis elegans CDK1 ortholog
protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 478 EKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISL 356
E +D G PS+AVR + L ++ G+ V +Q++++ L
Sbjct: 56 ESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENRLFL 96
>Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical
protein T19C4.2 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 452 TGTTMILFFRVEMSSS*CATVCVVTKFVHMETVFTLSQALDLSRN 586
T TT I F+ +++SS C T + + ++ +E FTL+ L N
Sbjct: 48 TLTTGITFYTLKLSSVTCQTCALSSIYLMLENNFTLNIMYSLMYN 92
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -1
Query: 636 LAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMV- 460
LA+LF +SR + L + + +N VS+ +V Q +++ + N++ +
Sbjct: 206 LAQLFEDVSREEGQLNQLFDNKQQHPVINNVSLSEGIVYNQANLTEMQEMRDSCNQVSIS 265
Query: 459 -VPVLLYAMSAISVTLRQLKTLESLKYQSKIPRSLF 355
+P A + +T+E +P +F
Sbjct: 266 TIPTTSTAQPETLFNVTDSQTVEQWLPTEVVPNDVF 301
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -1
Query: 636 LAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMV- 460
LA+LF +SR + L + + +N VS+ +V Q +++ + N++ +
Sbjct: 296 LAQLFEDVSREEGQLNQLFDNKQQHPVINNVSLSEGIVYNQANLTEMQEMRDSCNQVSIS 355
Query: 459 -VPVLLYAMSAISVTLRQLKTLESLKYQSKIPRSLF 355
+P A + +T+E +P +F
Sbjct: 356 TIPTTSTAQPETLFNVTDSQTVEQWLPTEVVPNDVF 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,852,830
Number of Sequences: 27780
Number of extensions: 311848
Number of successful extensions: 885
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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