Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E04
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    28   1.3  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   2.9  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    26   5.1  

>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 162 YTETIILIMLLMTSYRRIGSQIAVAVNRW 76
           +T++++ I    T++ R+ S+IAV VN W
Sbjct: 90  FTDSLLKIASDSTTHNRVRSRIAVLVNEW 118


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 652 SLFSPLLRNTCLLLIXYKN*SPNKQLTVKKIXNYQVHQ 765
           ++  P +    ++++ Y     NK   +KKI NYQ  +
Sbjct: 245 AIIMPAVMTPAVIILMYLERQANKDENIKKIINYQTEE 282


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 234 VYSISVGEISLNSLPFPSMKPNNMYTETIILIMLLMTSYRRIGSQIAVAVN 82
           +YS   G+ S  +L  PS+     ++E  I IM L      +G ++   VN
Sbjct: 6   LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,180
Number of Sequences: 5004
Number of extensions: 52341
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)