Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E04
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)                 28   9.5  

>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = -1

Query: 534 RVYIMPSKSPK--LNIWQRN 481
           +VY++PS+ PK  LNIW+R+
Sbjct: 620 KVYVLPSEIPKAGLNIWERS 639


>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
          Length = 769

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 58  KCSFAEPSIDCYRYLTSNSTIA 123
           KCSFA+P +D   +L SN  IA
Sbjct: 209 KCSFAQPYVDYLGHLLSNRGIA 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,900,391
Number of Sequences: 59808
Number of extensions: 339322
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)