Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E03
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   0.80 
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   1.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   4.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   5.6  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    24   7.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    24   7.5  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   7.5  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    24   7.5  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   9.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    23   9.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 100 RQNSQEVSRRNMQSTQQVKYMQRQLGR 180
           +Q +Q+  + N  S QQ++Y+  +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 55  LSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQ 189
           L+I ERS  +     R  S+ +SRR  +  Q++   QR+L    Q
Sbjct: 203 LNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
          role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 32 SHSKXPFGCQSANEVSVWGRV 94
          ++SK PFG   ++ +S W R+
Sbjct: 32 NNSKSPFGLNPSSRISQWPRI 52


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 128 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCD 12
           +L + WLF L     ++LL SLI N+K       ++L D
Sbjct: 5   KLESKWLFSLTESQKLYLLISLIINKKLPEAKFVYKLLD 43


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 274 WTRTTKYYSQNADAQSSAGRIHL 342
           WT   K  ++NAD  SS+GRI L
Sbjct: 118 WTPVIK--AENADQLSSSGRIEL 138


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 67  ERSKCMGPSRCRQNSQEVSRRNMQST 144
           ERS+ + PS C + SQ      ++ST
Sbjct: 68  ERSQILAPSECVRGSQSECVSKLEST 93


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 94  RCRQNSQEVSRRNMQSTQQVKYMQRQLG 177
           +C QN+  +S  N        Y+Q QLG
Sbjct: 97  KCYQNALAISPNNESLWYDAAYLQAQLG 124


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 111 AILPTPTRPHTLTS 70
           ++L TPTRPH L++
Sbjct: 281 SVLNTPTRPHALST 294


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 264 LIKVDSYDQVLFSKCRCTIIGR 329
           L K+DSY +     C C  I R
Sbjct: 11  LFKIDSYSKTFLLSCYCVSIYR 32


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 284 RPSIILKMPMHN 319
           RPSI+ K P+HN
Sbjct: 182 RPSIVEKFPLHN 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,887
Number of Sequences: 5004
Number of extensions: 16240
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)