Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E03
(342 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37) 28 1.7
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 3.0
SB_17049| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63) 26 7.0
SB_12844| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26) 26 9.2
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 26 9.2
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 26 9.2
>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
Length = 509
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 287 VVRVHFNQHVQISAVRCYSCVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLCIF 129
+ R HF+Q V + A ++ R F + + L P+ YF+C +L +F
Sbjct: 371 LARAHFSQAVYVQAAAQHASAEGRYLFLNAIANQLRYPNSHTHYFSCVLLYLF 423
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 1.7
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -2
Query: 293 YLVVRVHFNQHVQISAVRCYSCVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLCIFRLLT- 117
Y VV V V + +V SC C +A V SCL+R R + F+CCV + + T
Sbjct: 242 YRVVSVSCLYRVSVVSV---SCPC--RAVSV---SCLYRAVPRIVSFSCCVRVVLVVSTF 293
Query: 116 -SWLFC 102
LFC
Sbjct: 294 VCALFC 299
>SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 28 SIAFKXAFWLSISERSKCMG 87
++A AFWLS++ R KC G
Sbjct: 25 NVAIVTAFWLSVTGREKCGG 44
>SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 19 NRNSIAFKXAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYMQRQLG 177
N+ S+A W SI + KC G S+ S + + + QQ Y R G
Sbjct: 228 NKESLAGAEILWASIQDTQKCHG-SKIVMKSTNCAIKLPKHCQQFNYSVRAYG 279
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 11 YHIIEIQSHSKXPFGCQSANEVSVWGRVG 97
Y + +Q+H++ G ++ N S WGR G
Sbjct: 3237 YKVFSMQAHNECRSGPKAHNSYSAWGRKG 3265
>SB_17049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Frame = -2
Query: 149 CCVLCIF--RLLTSWL----------FCLHLLGPIHLLRSLIDNQKAILNAIEFRL 18
CC+L + +L TSWL FC HLL P+ + I ++KA + I+ ++
Sbjct: 296 CCILILTSDKLATSWLTKFESFLFERFCEHLLNPMMQVHYKIVSEKATSSNIQTKI 351
>SB_21666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 91 SRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQL 192
SR RQNS +V+ +S Q +Q+ LGR +L
Sbjct: 218 SRVRQNSAKVTTVRGESGAQFHELQQGLGRVNEL 251
>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
Length = 404
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 191 SCLHRPSCRCIYFTC 147
+CL RP+CR I TC
Sbjct: 287 ACLDRPNCRAIVATC 301
>SB_12844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 89 GPIHLLRSLIDNQKAILNAIEFRLCDTLL 3
G LLR + N KA I R+C TLL
Sbjct: 38 GSTRLLRKAVKNPKAPSTDISERICSTLL 66
>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
Length = 1344
Score = 25.8 bits (54), Expect = 9.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 149 CCVLCIFRLLTSWLFCL 99
C ++C F LL WL C+
Sbjct: 559 CLLMCSFALLAHWLACI 575
>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 229
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -2
Query: 182 HRPSCRCIYFTC----CVLCIFRLLTSWLFCLHLLGPIHLLRS 66
HRP + +YFTC C C F ++ L C P+ L +
Sbjct: 33 HRPHMQDVYFTCHRPTCKTCTFPVIA--LTCKTCTSPVTALHA 73
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -2
Query: 260 VQISAVRCYSC--VCCRKAFGV*VPSCLHRPSCRCIYFTCCVLCIFR 126
V +RC +C +CC F + +C C C C+ R
Sbjct: 84 VACRVMRCVACRVMCCVACFVMHCVACCVMRCVACCVMRCVACCVMR 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,293,997
Number of Sequences: 59808
Number of extensions: 144217
Number of successful extensions: 2499
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2497
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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