Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_E03
(342 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 1.2
Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 26 6.1
U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical pr... 26 6.1
AF045645-5|AAL06039.2| 140|Caenorhabditis elegans Ground-like (... 26 6.1
Z78410-11|CAB01639.2| 315|Caenorhabditis elegans Hypothetical p... 26 8.1
U32305-6|AAV58892.1| 411|Caenorhabditis elegans Hypothetical pr... 26 8.1
U32305-5|AAK18855.2| 501|Caenorhabditis elegans Hypothetical pr... 26 8.1
AC024756-4|AAX88819.1| 639|Caenorhabditis elegans Hypothetical ... 26 8.1
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 7 SVSHNRNSIAFKXAFWLSISERSKCMGPSRCRQNSQEVSR--RNMQSTQQ 150
SVS + N + + +S S+C+G +C NSQ +S + Q TQQ
Sbjct: 381 SVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCPQGTQQ 430
>Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical
protein Y41E3.14 protein.
Length = 329
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 167 RCIYFTCCVLCIFRLLTSWLF-CLHLLGP 84
R I+ CC++C F T+ ++ L L+ P
Sbjct: 238 RAIFIQCCIICFFNTATALIYNALSLMTP 266
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 52 WLSISERSKCMGPSRCRQNSQ-EVSRRNMQSTQQVKYMQRQLGRCRQLGTHTP 207
WL + E + P+R + SQ + N+Q+ QQ + Q+Q G R G P
Sbjct: 1890 WLRMRENQNLV-PNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAP 1941
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 52 WLSISERSKCMGPSRCRQNSQ-EVSRRNMQSTQQVKYMQRQLGRCRQLGTHTP 207
WL + E + P+R + SQ + N+Q+ QQ + Q+Q G R G P
Sbjct: 1879 WLRMRENQNLV-PNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAP 1930
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -2
Query: 230 CVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLC 135
C CC G C RP C C CC C
Sbjct: 77 CGCCGCGCGC----CCCRPRCCCCCRRCCTCC 104
>U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical
protein H03E18.2 protein.
Length = 204
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -2
Query: 128 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILN 36
+LL S LFCLHL GP L S +D +K +++
Sbjct: 171 QLLVS-LFCLHLSGP---LFSWLDTEKKLIS 197
>AF045645-5|AAL06039.2| 140|Caenorhabditis elegans Ground-like (grd
related) protein26 protein.
Length = 140
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 161 CSGNWGGVGNWVLIHQRLCGSKRKNSSEQQKFE 259
C+G +GG G Q CG K+++ E ++ E
Sbjct: 23 CAGLFGGGGGGGCCCQSACGRKKRSIDEDERRE 55
>Z78410-11|CAB01639.2| 315|Caenorhabditis elegans Hypothetical
protein C51E3.4 protein.
Length = 315
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = -2
Query: 179 RPSCRCIYFTCCVLCIFRLLTSWLFCLHLLG 87
R C + C+ + L +++C+HL G
Sbjct: 41 RSPCHILISLTCICDLLHLCAQFVYCVHLFG 71
>U32305-6|AAV58892.1| 411|Caenorhabditis elegans Hypothetical
protein B0336.7b protein.
Length = 411
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 293 YLVVRVHFNQHVQISAVRCYSCVCCRKA 210
+L HFN++ ++ + Y+C+ CRKA
Sbjct: 186 HLYYEFHFNRY-GLNNTKFYACLSCRKA 212
>U32305-5|AAK18855.2| 501|Caenorhabditis elegans Hypothetical
protein B0336.7a protein.
Length = 501
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 293 YLVVRVHFNQHVQISAVRCYSCVCCRKA 210
+L HFN++ ++ + Y+C+ CRKA
Sbjct: 276 HLYYEFHFNRY-GLNNTKFYACLSCRKA 302
>AC024756-4|AAX88819.1| 639|Caenorhabditis elegans Hypothetical
protein Y34D9A.3 protein.
Length = 639
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 293 YLVVRVHFNQHVQISAVRCYSCVCCRKAF 207
Y +++++F + S + C+SC C +K F
Sbjct: 131 YAILKLYFLCRNRKSKLECFSCGCVQKYF 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,014,294
Number of Sequences: 27780
Number of extensions: 103241
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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