Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E03
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   1.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    20   9.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 161 IYFTCCVLCIFRLLTSWL 108
           IY  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 161 IYFTCCVLCIFRLLTSWL 108
           IY  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 143 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 27
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 282 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 318


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 143 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 27
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 250 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 286


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 173 SCRCIYFTCCVLCIFRLLTSWL 108
           SC+CIY     LC+   L  +L
Sbjct: 182 SCKCIYVQSINLCMAGRLFGYL 203


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 154 KYMQRQLGRCRQLGTHTPK 210
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 154 KYMQRQLGRCRQLGTHTPK 210
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 242 RCYSCVCCRKAF 207
           + Y C+ C+KAF
Sbjct: 60  KTYQCLLCQKAF 71



 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 275 HFNQHVQISAVRCYSCVCCRKAFGV*VPSCLHR 177
           H+  H   +  + Y C  C K+F V     +HR
Sbjct: 110 HYRTH---TGEKPYQCEYCSKSFSVKENLSVHR 139


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 173 WGGVGNWVLIHQRLCGSKRKNSS 241
           WGG+G  VL    L G+    SS
Sbjct: 563 WGGIGVVVLFAVVLAGATCLGSS 585


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 QRLCGSKRKNSSEQQKFE 259
           +R  G KRK   +++KFE
Sbjct: 11  RRATGGKRKPIRKKRKFE 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,068
Number of Sequences: 438
Number of extensions: 1189
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)