Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E03
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69280.1 68414.m07943 expressed protein                             28   1.4  
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil...    27   3.3  
At1g11200.1 68414.m01283 expressed protein contains Pfam profile...    27   3.3  
At3g48820.2 68416.m05332 glycosyl transferase family 29 protein ...    26   7.6  
At3g48820.1 68416.m05331 glycosyl transferase family 29 protein ...    26   7.6  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    26   7.6  
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    25   10.0 

>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = -2

Query: 239 CYSCVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLCIFRLLTSWLFCLH 96
           C+SC C   + G     C     C C  +     C +     WLFC H
Sbjct: 311 CFSC-CRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCH 357


>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
           to PRLI-interacting factor N [Arabidopsis thaliana]
           GI:11139276; contains Pfam profile PF01713: Smr domain
          Length = 519

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 271 KWTRTTKYYSQNADAQSSAGRIH 339
           +W  T  YY + A+A S  GR H
Sbjct: 366 QWNVTKSYYQKAAEAYSKGGRAH 388


>At1g11200.1 68414.m01283 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 295

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 188 CLHRPSCRCIYFTCCVLCIFRLLTSWLF 105
           C+ RP C  +  T  +L I+ +  SW+F
Sbjct: 152 CIIRPVCSILMITLQILGIYPVWLSWIF 179


>At3g48820.2 68416.m05332 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 431

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  SRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQLG 195
           +RC+  S  + + ++   +   Y  RQ GRC  +G
Sbjct: 136 NRCQNKSLCIEKLSLVLPETPPYFPRQFGRCAVIG 170


>At3g48820.1 68416.m05331 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 440

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  SRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQLG 195
           +RC+  S  + + ++   +   Y  RQ GRC  +G
Sbjct: 145 NRCQNKSLCIEKLSLVLPETPPYFPRQFGRCAVIG 179


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 61   ISERSKCMGPSRCRQNSQEVSRR 129
            ++E+ +C G  RC+++  E S+R
Sbjct: 2220 LTEQCECSGSFRCKESGSEFSKR 2242


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 173 SCRCIYFTCCVLCIFRLLTSWL 108
           S  CI+   C LC F   +SWL
Sbjct: 25  SSYCIFLESCSLCSFSKNSSWL 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,531,433
Number of Sequences: 28952
Number of extensions: 92363
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)