Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E02
         (324 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4BQN8 Cluster: DNA polymerase III subunit delta; n=3; ...    33   1.2  
UniRef50_A7CZG6 Cluster: Regulatory protein GntR HTH; n=1; Opitu...    31   3.7  
UniRef50_Q5ZC58 Cluster: Putative uncharacterized protein P0443D...    31   3.7  
UniRef50_A5K473 Cluster: Protein kinase domain containing protei...    31   3.7  
UniRef50_O45461 Cluster: Putative uncharacterized protein srh-13...    31   6.5  

>UniRef50_A4BQN8 Cluster: DNA polymerase III subunit delta; n=3;
           Ectothiorhodospiraceae|Rep: DNA polymerase III subunit
           delta - Nitrococcus mobilis Nb-231
          Length = 340

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 237 DRNAGSLRLRGGRPVCG-ASAVRCNCRLPPFLRVILICTYRL 115
           +R    LRL GG+P  G A A++  CR PP   ++L+ + RL
Sbjct: 77  ERRLIELRLPGGKPGAGGAQALQAYCRAPPADTLLLVASARL 118


>UniRef50_A7CZG6 Cluster: Regulatory protein GntR HTH; n=1;
           Opitutaceae bacterium TAV2|Rep: Regulatory protein GntR
           HTH - Opitutaceae bacterium TAV2
          Length = 369

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -3

Query: 319 EFGRPMSANRVQSNLASDK-LSKCLRRF*SQCWLSSPARRPTRMWCLCRTLQLPATPFPT 143
           + G  +   + +S+ A ++   K +R     CWL S +     M   C    +PA     
Sbjct: 123 QIGLQVYQKKFRSDGAKNRAFRKLVRESRHDCWLISWSNSNASMKQWCEESNVPALVIGA 182

Query: 142 CHPYLYLPSTALHSPASTHKAQMQMMR 62
            H    LP   +   AS H A  QM+R
Sbjct: 183 RHAGCGLPHVMVDHQASGHHAAAQMIR 209


>UniRef50_Q5ZC58 Cluster: Putative uncharacterized protein
           P0443D08.35; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0443D08.35 - Oryza sativa subsp. japonica (Rice)
          Length = 195

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 184 LCRTLQLPA-TPFPTCHPYLYLPSTALHSPASTHKAQMQMMRAC 56
           LCR  ++ A TP     P+  + ST  H PA T +      RAC
Sbjct: 8   LCRRARITASTPLAGQSPHAAISSTRCHQPAGTRRPPSPCRRAC 51


>UniRef50_A5K473 Cluster: Protein kinase domain containing protein;
           n=2; Plasmodium|Rep: Protein kinase domain containing
           protein - Plasmodium vivax
          Length = 1278

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 225 GSLRLRGGR-PVCGASAVRCNCRLPPFLRVILICTYRLQLCIHRLLPTKR 79
           G+L L GG  P+CG +   C   LP     + +C   L +C  ++ PT R
Sbjct: 765 GTLPLCGGTLPLCGDALPLCGDALPLCGDALPLCGDTLPICAEKVFPTAR 814


>UniRef50_O45461 Cluster: Putative uncharacterized protein srh-136;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein srh-136 - Caenorhabditis elegans
          Length = 330

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 197 PYVVPLPYAATAGYPLSYVSSLSVPTV 117
           P+V+   YAA AGYPL  +  L VPT+
Sbjct: 72  PFVI---YAAVAGYPLGVIVYLGVPTI 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,779,652
Number of Sequences: 1657284
Number of extensions: 5426604
Number of successful extensions: 15461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15450
length of database: 575,637,011
effective HSP length: 84
effective length of database: 436,425,155
effective search space used: 10037778565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)