Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E02
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   0.93 
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   2.1  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   2.1  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   6.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   6.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    23   8.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    23   8.6  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -3

Query: 136 PYLYLPSTALHSPASTHKAQMQMMRACVNKML 41
           P L + ++  H+  + HKA ++ + +C+N+ +
Sbjct: 545 PILTILASLQHTSPTQHKAVLEFLNSCINRCI 576


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 187 CLCRTLQLPATPFPTCHPYLYLP 119
           C  R +Q    PFP  H Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 319 EFGRPMSANRVQSNLASDKLSKCL 248
           E G+P+S + V++NL  DKL K +
Sbjct: 517 EPGKPLSPSLVEANLNPDKLIKTI 540


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 178 RTLQLPATPFPTCHPYLYLPSTALHSPASTHKAQMQMMRACVNKMLK*RQTV 23
           ++  +PAT       Y   PSTA  +  +   A    ++  V+K L+ R+ V
Sbjct: 505 KSRNVPATVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKV 556


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 150 FLRVILICTYRLQLCIHRLLPT 85
           FL VI I  Y+L+  +HRL  T
Sbjct: 347 FLNVIGIAAYKLEDPVHRLFVT 368


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 115 TALHSPASTHKAQMQMMRACVNKML 41
           +A+HS AS+ KAQ Q +   +  +L
Sbjct: 175 SAVHSQASSTKAQTQFLHQTLGSIL 199


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 173 AATAGYPLSYVSSLSVPTVYSSA 105
           AATA +  + VSS  + T Y+SA
Sbjct: 170 AATASFSYTNVSSSVIATAYTSA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,904
Number of Sequences: 5004
Number of extensions: 22079
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)