Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_E02
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               29   1.1  
SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)                   28   1.5  
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           27   2.6  
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)                    27   4.6  
SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)         26   6.1  
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             26   6.1  

>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 153 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKRLK 251
           G  G   VRQR+ +R G +     QHCD+ RLK
Sbjct: 127 GDRGGVGVRQRYPVRGGGK-----QHCDEARLK 154


>SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)
          Length = 327

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 176 YAATAGYPLSYVSSLSVPTVYSSAFTGFYPQ 84
           Y A  GYP+     +  P  Y  A  G YPQ
Sbjct: 295 YPAQGGYPMQPQGQMPPPPSYGQATAGQYPQ 325


>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 172 LQLPATPFPTCHPYLYLPSTALHSPASTHKAQMQMMRA 59
           L LP+TP  T HP  Y  +  L    ST++A + +  A
Sbjct: 100 LYLPSTPLLTEHPSTYRATLLLTEHPSTYRAPLYLPSA 137


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 289 VQSNLASDKLSKCLRRF*SQCWLSSPARRPT 197
           ++  L +D     + +F  QCW   P+ RPT
Sbjct: 528 LRPTLNADDCDPTITKFIKQCWSEEPSARPT 558


>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
          Length = 406

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 197 PYVVPLPY---AATAGYPLSYVSSLSVPTVYSSAFTG 96
           PY  P P    AA A YP +YVSS +  T  +S+F G
Sbjct: 104 PYPAPYPATYSAAPAAYPAAYVSSAT--TYDTSSFGG 138


>SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)
          Length = 482

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 277 LASDKLSKCLRRF*SQCWLSSPARRPTRMWCLCRTLQ-LPATPFPTCHPYLYLPSTALHS 101
           L  D + + L R   + WL    R   + W LCR+L  + ATP    H   Y+P  +  +
Sbjct: 382 LCRDYIKQWLCRDYIKQWL---CRDYIKQW-LCRSLMTVLATPCSLAHTLSYIPQVSARA 437

Query: 100 PASTHKAQMQMMR 62
             S  +     +R
Sbjct: 438 QGSVQEISSSALR 450


>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 197 PYVVPLP--YAATAGYPLSYVSSLSVPTVYSSAFTGFYPQSA 78
           PY  P P  YAA+A    + +S  +     ++A+  +YP S+
Sbjct: 417 PYQAPAPETYAASANTTAAEISQQNYTASPTAAYPAYYPASS 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,102
Number of Sequences: 59808
Number of extensions: 192146
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)