Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D24
         (373 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02475.1 68414.m00198 expressed protein                             30   0.56 
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic...    29   1.3  
At5g38400.1 68418.m04642 hypothetical protein                          27   5.3  
At5g48060.1 68418.m05938 C2 domain-containing protein contains I...    26   7.0  
At4g38190.1 68417.m05391 cellulose synthase family protein simil...    26   9.2  
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF...    26   9.2  

>At1g02475.1 68414.m00198 expressed protein
          Length = 219

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 168 WRLFINLFRMKLKNSCYARSLKPTPPKRKH 79
           W L  N F   +K S  AR+L+PTP ++ H
Sbjct: 124 WSLKYNAFGQDIKYSWLARNLQPTPNQKIH 153


>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
           acid-induced protein 12 (IAA12) identical to SP|Q38830
           Auxin-responsive protein IAA12 (Indoleacetic
           acid-induced protein 12) {Arabidopsis thaliana}
          Length = 239

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 171 PWRLFIN-LFRMKLKNSCYARSLKPTPPKRKHRQ 73
           PWR+FIN + R+++  +  A  L P   ++K RQ
Sbjct: 201 PWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQ 234


>At5g38400.1 68418.m04642 hypothetical protein
          Length = 151

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 138 KLKNSCYARSLKPTPPKRK 82
           K + + Y  S+KP PPKRK
Sbjct: 42  KARMNVYKESMKPLPPKRK 60


>At5g48060.1 68418.m05938 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1036

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 219 PPQLDVKVSWASAI 260
           PP +D+K+SWA A+
Sbjct: 903 PPHMDMKLSWAEAV 916


>At4g38190.1 68417.m05391 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit gi:2827143 from
           [Arabidopsis thaliana], cellulose synthase-5
           (gi:9622882) from Zea mays
          Length = 1111

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 304 MYKFTILFLVLACFIMA 254
           +Y FT LFL+L CF+ A
Sbjct: 885 IYPFTSLFLILYCFLPA 901


>At1g28280.1 68414.m03471 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 247

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 347 SSCFEVTQRTNSAKNVQIHDSIPCFGLLHNGRSP 246
           +S F + +R NS KN++I+   P F  +++  SP
Sbjct: 123 ASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSP 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,385,433
Number of Sequences: 28952
Number of extensions: 173268
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)