Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D20
         (507 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9U8C9 Cluster: Putative uncharacterized protein T11F1....    29   3.3  
UniRef50_Q0N403 Cluster: Hz102-like protein; n=1; Clanis bilinea...    32   6.5  
UniRef50_A2FFF6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.6  

>UniRef50_Q9U8C9 Cluster: Putative uncharacterized protein T11F1.6;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein T11F1.6 - Caenorhabditis elegans
          Length = 431

 Score = 29.5 bits (63), Expect(2) = 3.3
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 224 ENLHPNYCIEGVSFA 180
           +N+H NYC++GVSF+
Sbjct: 323 KNIHANYCLDGVSFS 337



 Score = 22.6 bits (46), Expect(2) = 3.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 236 VITHENLHPNYCI 198
           ++  ENLHP++C+
Sbjct: 295 IMNLENLHPDFCL 307


>UniRef50_Q0N403 Cluster: Hz102-like protein; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: Hz102-like protein -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 164

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 413 SCLKLIYLHHYLYNFRNYWWQDL 481
           +CL  IY  HYL+  RN  WQ+L
Sbjct: 125 ACLASIYKRHYLHEMRNVSWQEL 147


>UniRef50_A2FFF6 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 2234

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
 Frame = +3

Query: 72   NLK*FRRPL----LVLGCIVSL---CGATILYISAVKSLSVLTGKGHTLYAIIRM*IFMS 230
            N K F++PL    + L C  S+   C A  L++ +VKS +++T   H     I+   +  
Sbjct: 1515 NFKKFKQPLSPTEIELICTKSIRGECAALALHLISVKSNALVTSAIHLFETAIKNTKYSP 1574

Query: 231  DDFHDITSMGCRSSLLGILNNSNPEPKICELTPHFFGFILVCPFSFIFLGFCRIVYI 401
            D +  +  +   S+    L NSN    + ++ P    ++   P+S + L    + Y+
Sbjct: 1575 DSYFPLGPVATYSAFFKELQNSN---LVDDVVPRLSDYLPSSPYSCVPLLSLLVEYL 1628


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,341,240
Number of Sequences: 1657284
Number of extensions: 8221589
Number of successful extensions: 17642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17640
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)