Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D20
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    27   1.2  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.6  

>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 183 CQSERIKTS---RLKYTG*WHHTNLQYTLTPGVVCEITSDYIXFIK*YYLF*EMGPTTTG 13
           CQ E ++     R  YTG W HT  ++ ++ G   E    +  ++K   L  E G   +G
Sbjct: 91  CQIESLRKDGKVRHIYTGSWDHTIKKWNVSTGECVETLIGHTDYVKCLLLLEEEGLLLSG 150

Query: 12  A 10
           +
Sbjct: 151 S 151


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 166 KDFTAEIYRIVAPHKLTIHPNTRSGLRNHFRLYXLYQMILFILR 35
           KD+   + RI   H + +HP+ +S L N F +  L Q IL + R
Sbjct: 429 KDYPTVVSRIRTLHHVKLHPDNKSRLEN-FSV-ILLQHILHLTR 470


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 266 SATHRCYIMKVITHENLHPN 207
           SAT+  Y +KV+  E LHP+
Sbjct: 802 SATNYLYTIKVVRGEGLHPD 821


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 158 HG*NIQDSGTTQTYNTP*HQEWSAKSLQIISXLSN 54
           HG     +G T       +  W AK LQ++S  S+
Sbjct: 724 HGHKASHNGATTILGIDVNSVWKAKRLQVVSMASS 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,589
Number of Sequences: 5004
Number of extensions: 36829
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)