Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D20
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    27   6.7  
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  27   8.9  
SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 246 ITSMGCRSSLLGILNNSNPEPKICELTPH 332
           + + G  S L+G  NNS P+  +C+  PH
Sbjct: 633 VGASGSTSRLIGTSNNSPPDWPLCKDNPH 661


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 276 LGILNNSNPEPKICELTPH 332
           LG+LNNS+PEP     TP+
Sbjct: 425 LGLLNNSSPEPSPPYFTPN 443


>SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 225 MSDDFHDITSMGCRSSLLGILNNSNPE 305
           + DD   IT++ C   L G  N S+PE
Sbjct: 4   LKDDVRRITALACALKLFGKRNTSDPE 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,931
Number of Sequences: 59808
Number of extensions: 266510
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)