Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D19
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 33 0.29
SB_3479| Best HMM Match : PAH (HMM E-Value=4.7) 32 0.38
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63) 31 0.89
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4) 31 1.2
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1) 29 3.6
SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1) 29 3.6
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 4.7
SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7) 28 8.3
SB_54952| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-16) 28 8.3
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 32.7 bits (71), Expect = 0.29
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Frame = +3
Query: 3 TSHRXF--INHHYNXXXXXXXXXXXXRE*KNLHNIIIHNLFTGPVYI*VDSRYIHYTLQY 176
T H F I HHY +II H+ F ++ + YI + +
Sbjct: 1033 THHYFFVIITHHYFFSIITHHFFFSIITDHYFFSIITHHYF----FVIITHHYIFPIITH 1088
Query: 177 RH*STQTTYNVFDERYYIIIVNYYCVAV-HYYFFCQYIYSFTYFFL*FTNKFLNIKLGHH 353
+ T++ F + II +Y+ V + H+Y F I++ YFF T+ + + + +H
Sbjct: 1089 HDFFSIITHHYF---FSIITYHYFFVIITHHYIFS--IFTHHYFFSIITHHYSFVIITYH 1143
Query: 354 YSIWIYNN 377
Y I+ +
Sbjct: 1144 YIFSIFTH 1151
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 201 YNVFDERYYIIIVN---YYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHY 356
+++ Y+ I+ ++ + H++FF I + YFF T+ + + + HHY
Sbjct: 993 FSIITHHYFFSIITHHFFFSIITHHFFFS--IITHHYFFSIITHHYFFVIITHHY 1045
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 240 NYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHY 356
+++ + H+YFF I + YFF T+ + + + HHY
Sbjct: 919 DFFSIITHHYFFS--IITDHYFFSIITHHYFFVIITHHY 955
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 222 YYIIIVNYYCVAV--HYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHY 356
+++II ++Y ++ H+YFF I + +FF T+ F + HH+
Sbjct: 947 FFVIITHHYIFSIITHHYFFS--IITHHFFFSIITHHFFFSIITHHF 991
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Frame = +3
Query: 201 YNVFDERYYIIIVN---YYCVAVHYYFFC----QYIYSFT---YFFL*FTNKFLNIKLGH 350
+++ Y+ I+ ++ + H+YFF YI+S YFF T+ F + H
Sbjct: 921 FSIITHHYFFSIITDHYFFSIITHHYFFVIITHHYIFSIITHHYFFSIITHHFFFSIITH 980
Query: 351 HY 356
H+
Sbjct: 981 HF 982
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 201 YNVFDERYYIIIVN---YYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHY 356
+++ ++ I+ ++ + H+YFF I + +FF T+ F + HHY
Sbjct: 975 FSIITHHFFFSIITHHFFFSIITHHYFFS--IITHHFFFSIITHHFFFSIITHHY 1027
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 201 YNVFDERYYIIIVN---YYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHY 356
+++ ++ I+ ++ + H+YFF I + YFF+ T+ + + HH+
Sbjct: 1002 FSIITHHFFFSIITHHFFFSIITHHYFFS--IITHHYFFVIITHHYFFSIITHHF 1054
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 201 YNVFDERYYI-IIVNYY--CVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHY 356
+++ Y+ II ++Y + H+YFF I + +FF T+ + + HHY
Sbjct: 1020 FSIITHHYFFSIITHHYFFVIITHHYFFS--IITHHFFFSIITDHYFFSIITHHY 1072
>SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)
Length = 222
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYS 293
+Y + R+ Y RYY + V YY V V YY CQ + S
Sbjct: 114 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCQVLQS 158
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 30 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVMYY 73
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 156 IHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
++Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 85 MYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 129
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 2 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 45
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 9 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 52
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 16 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 59
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 23 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 66
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 93 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 136
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 100 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 143
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 107 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVRYY 150
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 37 YYKVCVRYYKVCVRYYKVCVRYYKVCVRYYKVCVMYYKVCVKYY 80
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 44 YYKVCVRYYKVCVRYYKVCVRYYKVCVMYYKVCVKYYKVCVMYY 87
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + YY YY +YY++ Y Y + Y++
Sbjct: 110 YYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 161
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + YY YY +YY++ Y Y + Y++
Sbjct: 111 YYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 162
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + YY +YY +YY++ Y Y + Y++
Sbjct: 103 YYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYY 154
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/66 (21%), Positives = 26/66 (39%)
Frame = +3
Query: 174 YRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHH 353
YR Y + YY YY +YY++ Y Y + Y++ + + ++
Sbjct: 97 YRQRHAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYY 156
Query: 354 YSIWIY 371
Y + Y
Sbjct: 157 YYYYYY 162
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y YY YY +YY++ Y Y + Y++
Sbjct: 112 YYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 163
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYF 305
Y +Y Y + Y+ + YY YY +YY++ Y Y + Y+
Sbjct: 114 YYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 164
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + +Y YY +YY++ Y Y + Y++
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYY 160
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + YY YY +YY++ Y Y + Y++
Sbjct: 104 YYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYY 155
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + YY YY +YY++ Y Y + Y++
Sbjct: 105 YYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYY 156
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
Y +Y Y + Y + YY YY +YY++ Y Y + Y++
Sbjct: 106 YYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYY 157
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNI 338
H + RH + Y + YY YY +YY+ Y Y + Y++ + +
Sbjct: 94 HTVYRQRH-AYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYY 152
Query: 339 KLGHHYSIWIYNNS 380
++Y + Y +S
Sbjct: 153 YYYYYYYYYYYYHS 166
>SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63)
Length = 276
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFC--QYIYSFTYF 305
+Y + +R+ Y RYY + V YY V + YY C Y F Y+
Sbjct: 44 YYKVCFRYYKVCVRYYKVCVRYYKVCVRYYKVCIRYYKVCFRYYKVCFRYY 94
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFC--QYIYSFTYF 305
+Y + +R+ Y RYY + V YY V V YY C Y F Y+
Sbjct: 37 YYKVCFRYYKVCFRYYKVCVRYYKVCVRYYKVCVRYYKVCIRYYKVCFRYY 87
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + +R+ Y RYY + V YY V V YY C Y
Sbjct: 86 YYKVCFRYYKVCVRYYKVCVRYYKVCVMYYKVCVRYYKVCVMYY 129
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 219 RYYIIIVNYYCVAVHYYFFC--QYIYSFTYF 305
RYY + V YY V V YY C Y F Y+
Sbjct: 15 RYYKVCVRYYKVCVRYYKVCIRYYKVCFRYY 45
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + +R+ Y RYY + V YY V V YY C Y
Sbjct: 79 YYKVCFRYYKVCFRYYKVCVRYYKVCVRYYKVCVMYYKVCVRYY 122
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 219 RYYIIIVNYYCVAVHYYFFC--QYIYSFTYF 305
RYY + V YY V + YY C Y F Y+
Sbjct: 22 RYYKVCVRYYKVCIRYYKVCFRYYKVCFRYY 52
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 159 HYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIY 290
+Y + R+ Y RYY + V YY V V YY C Y
Sbjct: 100 YYKVCVRYYKVCVMYYKVCVRYYKVCVMYYKVCVKYYKVCFRYY 143
>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
YY YY HYY++ Y Y + Y++
Sbjct: 266 YYYYYYYYYYYYYHYYYYYYYYYYYYYYY 294
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
YY YY +YY++ Y Y + Y++
Sbjct: 260 YYYYYYYYYYYYYYYYYYYHYYYYYYYYY 288
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
YY YY +YY++ Y Y + Y++
Sbjct: 261 YYYYYYYYYYYYYYYYYYHYYYYYYYYYY 289
>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
Length = 355
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 198 TYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHYSIWIYN 374
TYN+ +Y++ YCVA+ Y C+Y S + F I +IW YN
Sbjct: 265 TYNIARLCHYLLHKLCYCVALQYRSHCRYYTSCATVWHYNIAAFAIIYYTSCATIWHYN 323
>SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)
Length = 122
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTY-FFL*FTNKF 329
Y +Y Y + Y + YY+ + NYY +YY Y Y ++L N +
Sbjct: 23 YNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYY 82
Query: 330 LNIKLGHHYSIWIYN 374
L++ ++Y + +YN
Sbjct: 83 LDV---YNYYLDVYN 94
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 153 YIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTY-FFL*FTNKF 329
Y +Y Y + Y + YY+ + NYY +YY Y Y ++L N +
Sbjct: 9 YNYYLDVYNYYLDIYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYY 68
Query: 330 LNIKLGHHYSIWIYN 374
L++ ++Y + +YN
Sbjct: 69 LDV---YNYYLDVYN 80
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 186 STQTTYNVFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYF 305
+T TT V Y YYC YY+ Y Y + Y+
Sbjct: 459 TTTTTAPVLRYCYCYCYCYYYCYCYCYYYCYYYCYCYCYY 498
>SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
YY YY +YY++ Y Y + Y++
Sbjct: 18 YYYYYYYYYYYYYYYYYYYYYYYYYYYYY 46
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
YY YY +YY++ Y Y + Y++
Sbjct: 19 YYYYYYYYYYYYYYYYYYYYYYYYYYYYY 47
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
YY YY +YY++ Y Y + Y++
Sbjct: 20 YYYYYYYYYYYYYYYYYYYYYYYYYYYYY 48
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +3
Query: 207 VFDERYYIIIVNYYCVAVHYYFFCQYIYSFTYFF 308
+F Y YY +YY++ Y Y + Y++
Sbjct: 11 IFPHNYAYYYYYYYYYYYYYYYYYYYYYYYYYYY 44
>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
Length = 540
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 147 SRYIHYTLQYRH*STQTTYNVFDERYYIIIVNYYCVAVHYY-FFCQYIYSFTYFFL*FTN 323
+RY Y +Y T Y+V+ RY++ + Y+ Y+ + +Y T + + T
Sbjct: 219 TRYHVYMTRYH--VYMTRYHVYMTRYHVYMTRYHVYMTRYHVYMTRYHVYMTRYHVYMTR 276
Query: 324 KFLNI 338
LN+
Sbjct: 277 YHLNL 281
>SB_54952| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-16)
Length = 357
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 237 VNYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHYS 359
++Y +V FFC Y+++F Y L F++ + Y+
Sbjct: 244 LSYMAASVILVFFCPYLFTFVYTSL-IVGNFIDTTIADEYT 283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,951,812
Number of Sequences: 59808
Number of extensions: 336360
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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