Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D19
(692 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK127397-1|BAC86958.1| 130|Homo sapiens protein ( Homo sapiens ... 31 3.9
AJ251507-1|CAB85895.1| 1951|Homo sapiens type III sodium channel... 31 3.9
AF330135-2|AAG53415.1| 1951|Homo sapiens voltage-gated sodium ch... 31 3.9
AF330135-1|AAG53414.1| 1951|Homo sapiens voltage-gated sodium ch... 31 3.9
AF225988-1|AAF35390.1| 1980|Homo sapiens voltage-gated sodium ch... 31 3.9
AF225987-1|AAK00219.1| 2000|Homo sapiens voltage-gated sodium ch... 31 3.9
AF225986-1|AAK00218.1| 1951|Homo sapiens voltage-gated sodium ch... 31 3.9
AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium ch... 31 3.9
AC013463-1|AAY15072.1| 2000|Homo sapiens unknown protein. 31 3.9
AB037777-1|BAA92594.1| 519|Homo sapiens KIAA1356 protein protein. 31 3.9
AB037525-1|BAA90445.1| 364|Homo sapiens voltage-gated sodium ch... 31 3.9
AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein. 31 3.9
X65362-1|CAA46439.1| 423|Homo sapiens sodium channel protein. 31 5.2
M94055-1|AAA18895.1| 2005|Homo sapiens voltage-gated sodium chan... 31 5.2
AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium ch... 31 5.2
AF327246-2|AAG53413.1| 2005|Homo sapiens voltage-gated sodium ch... 31 5.2
AF327246-1|AAG53412.1| 2005|Homo sapiens voltage-gated sodium ch... 31 5.2
AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium ch... 31 5.2
AC011303-1|AAY14971.1| 2005|Homo sapiens unknown protein. 31 5.2
AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein. 31 5.2
AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium ch... 31 5.2
AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium ch... 31 5.2
AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium ch... 31 5.2
>AK127397-1|BAC86958.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45488 fis, clone BRTHA2003759. ).
Length = 130
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 222 YYIIIVNYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHYSIWIY 371
Y+ I Y Y + C YIY + Y ++ FT ++ + + + I+IY
Sbjct: 38 YFYIFTYIYLYIFIYIYICLYIYLYIYLYI-FTYIYIYLHIFIYLHIFIY 86
Score = 30.3 bits (65), Expect = 6.8
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 225 YIIIVNYYCVAVHYYFFCQYIYSFTYFFL*FTNKFLNIKLGHHYSIWIY 371
YI I Y + ++ Y + YIY + YF++ FT +L I + + ++IY
Sbjct: 14 YIFIFIYIFIYIYIYVYV-YIYLYIYFYI-FTYIYLYIFIYIYICLYIY 60
>AJ251507-1|CAB85895.1| 1951|Homo sapiens type III sodium channel
protein protein.
Length = 1951
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1587 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 1640
>AF330135-2|AAG53415.1| 1951|Homo sapiens voltage-gated sodium channel
type III alpha subunit protein.
Length = 1951
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1587 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 1640
>AF330135-1|AAG53414.1| 1951|Homo sapiens voltage-gated sodium channel
type III alpha subunit protein.
Length = 1951
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1587 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 1640
>AF225988-1|AAF35390.1| 1980|Homo sapiens voltage-gated sodium channel
alpha subunit protein.
Length = 1980
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FIF IF + Y K + DD+
Sbjct: 1632 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDM 1685
>AF225987-1|AAK00219.1| 2000|Homo sapiens voltage-gated sodium channel
alpha subunit SCN3A protein.
Length = 2000
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1636 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 1689
>AF225986-1|AAK00218.1| 1951|Homo sapiens voltage-gated sodium channel
alpha subunit splice variant SCN3A-s protein.
Length = 1951
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1587 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 1640
>AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium channel
alpha subunit protein.
Length = 1980
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FIF IF + Y K + DD+
Sbjct: 1632 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDM 1685
>AC013463-1|AAY15072.1| 2000|Homo sapiens unknown protein.
Length = 2000
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1636 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 1689
>AB037777-1|BAA92594.1| 519|Homo sapiens KIAA1356 protein protein.
Length = 519
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 155 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDM 208
>AB037525-1|BAA90445.1| 364|Homo sapiens voltage-gated sodium
channel alpha subunit protein.
Length = 364
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FIF IF + Y K + DD+
Sbjct: 21 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDM 74
>AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein.
Length = 1980
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FIF IF + Y K + DD+
Sbjct: 1632 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDM 1685
>X65362-1|CAA46439.1| 423|Homo sapiens sodium channel protein.
Length = 423
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 134 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 187
>M94055-1|AAA18895.1| 2005|Homo sapiens voltage-gated sodium channel
protein.
Length = 2005
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1641 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1694
>AY043484-1|AAK95360.1| 1998|Homo sapiens voltage-gated sodium channel
type I protein.
Length = 1998
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1640 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1693
>AF327246-2|AAG53413.1| 2005|Homo sapiens voltage-gated sodium channel
type II alpha subunit protein.
Length = 2005
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1641 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1694
>AF327246-1|AAG53412.1| 2005|Homo sapiens voltage-gated sodium channel
type II alpha subunit protein.
Length = 2005
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1641 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1694
>AF225985-1|AAK00217.1| 1999|Homo sapiens voltage-gated sodium channel
alpha subunit SCN1A protein.
Length = 1999
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1641 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1694
>AC011303-1|AAY14971.1| 2005|Homo sapiens unknown protein.
Length = 2005
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1641 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1694
>AC010127-1|AAX81984.1| 1998|Homo sapiens unknown protein.
Length = 1998
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1640 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1693
>AB098335-1|BAC45228.1| 1981|Homo sapiens Voltage-gated sodium channel
alpha 1 subunit protein.
Length = 1981
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1623 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1676
>AB093549-1|BAC21102.1| 1998|Homo sapiens Voltage-gated sodium channel
alpha1 subunit protein.
Length = 1998
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1640 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1693
>AB093548-1|BAC21101.1| 2009|Homo sapiens voltage-gated sodium channel
alpha1 subunit protein.
Length = 2009
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 501 KGLSGPRFLVDFIFFFC-CIFNVACVLHIIYFIFVIFLTIKYCYYKSKWNNDDL 343
KG G R L+ + +FN+ +L ++ FI+ IF + Y K + DD+
Sbjct: 1651 KGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDM 1704
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,027,408
Number of Sequences: 237096
Number of extensions: 1443365
Number of successful extensions: 3410
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3407
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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