Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D18
(531 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E45ED1 Cluster: PREDICTED: similar to LOC564406 ... 86 4e-16
UniRef50_Q71UI9 Cluster: Histone H2AV; n=156; Eukaryota|Rep: His... 86 4e-16
UniRef50_A0DGQ5 Cluster: Histone H2A; n=11; Eukaryota|Rep: Histo... 77 3e-13
UniRef50_Q12692 Cluster: Histone H2A.Z; n=65; Eukaryota|Rep: His... 73 4e-12
UniRef50_P48003 Cluster: Histone H2A.Z; n=7; Eukaryota|Rep: Hist... 71 1e-11
UniRef50_Q4QEG6 Cluster: Histone H2A, putative; n=7; Trypanosoma... 60 3e-08
UniRef50_A3CI01 Cluster: Histone H2A; n=1; Oryza sativa (japonic... 58 1e-07
UniRef50_A3CGY8 Cluster: Histone H2A; n=1; Oryza sativa (japonic... 58 2e-07
UniRef50_O75367 Cluster: Core histone macro-H2A.1; n=179; Eukary... 56 4e-07
UniRef50_Q9P0M6 Cluster: Core histone macro-H2A.2; n=74; Eukaryo... 54 2e-06
UniRef50_Q6FI13 Cluster: Histone H2A type 2-A; n=268; Eukaryota|... 54 3e-06
UniRef50_Q54LA5 Cluster: Histone H2A; n=1; Dictyostelium discoid... 53 5e-06
UniRef50_P16104 Cluster: Histone H2A.x; n=12; Eukaryota|Rep: His... 53 5e-06
UniRef50_UPI0000DA3FD0 Cluster: PREDICTED: similar to Histone H2... 52 6e-06
UniRef50_P84051 Cluster: Histone H2A; n=60; Protostomia|Rep: His... 52 1e-05
UniRef50_P35061 Cluster: Histone H2A; n=31; Eumetazoa|Rep: Histo... 51 2e-05
UniRef50_Q4SU60 Cluster: Histone H2A; n=2; Tetraodontidae|Rep: H... 50 3e-05
UniRef50_Q86EU0 Cluster: Histone H2A; n=1; Schistosoma japonicum... 48 1e-04
UniRef50_A7R6L6 Cluster: Chromosome undetermined scaffold_1333, ... 46 4e-04
UniRef50_UPI0000498F6A Cluster: histone H2A; n=2; Entamoeba hist... 45 0.001
UniRef50_Q23429 Cluster: Histone H2A; n=1; Caenorhabditis elegan... 45 0.001
UniRef50_A2YNE9 Cluster: Histone H2A; n=1; Oryza sativa (indica ... 44 0.002
UniRef50_P35066 Cluster: Histone H2A; n=40; Trypanosomatidae|Rep... 41 0.016
UniRef50_Q54WG6 Cluster: Histone H2A; n=1; Dictyostelium discoid... 38 0.11
UniRef50_Q54HW2 Cluster: Histone H2A domain-containing protein; ... 38 0.14
UniRef50_Q9LD75 Cluster: Histone H2A.2; n=1; Lilium longiflorum|... 38 0.19
UniRef50_A4VD85 Cluster: Putative uncharacterized protein; n=1; ... 33 3.1
UniRef50_UPI0000E49FF4 Cluster: PREDICTED: similar to KIAA0467 p... 33 4.1
UniRef50_UPI0001554FEE Cluster: PREDICTED: hypothetical protein;... 33 5.4
UniRef50_A0D801 Cluster: Chromosome undetermined scaffold_40, wh... 32 7.2
>UniRef50_UPI0000E45ED1 Cluster: PREDICTED: similar to LOC564406
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC564406 protein -
Strongylocentrotus purpuratus
Length = 338
Score = 86.2 bits (204), Expect = 4e-16
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKK 401
K ITPRHLQLAIRGDEELDSLIKATIA GGVIPHIHKSLIGKK
Sbjct: 290 KRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 332
>UniRef50_Q71UI9 Cluster: Histone H2AV; n=156; Eukaryota|Rep:
Histone H2AV - Homo sapiens (Human)
Length = 128
Score = 86.2 bits (204), Expect = 4e-16
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKK 401
K ITPRHLQLAIRGDEELDSLIKATIA GGVIPHIHKSLIGKK
Sbjct: 80 KRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>UniRef50_A0DGQ5 Cluster: Histone H2A; n=11; Eukaryota|Rep: Histone
H2A - Paramecium tetraurelia
Length = 183
Score = 77.0 bits (181), Expect = 3e-13
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKK 401
+ ITPRHLQLAIRGDEELD LI+ATIA GGVIPHIHK+L GK+
Sbjct: 132 RRITPRHLQLAIRGDEELDILIRATIAGGGVIPHIHKALFGKQ 174
>UniRef50_Q12692 Cluster: Histone H2A.Z; n=65; Eukaryota|Rep:
Histone H2A.Z - Saccharomyces cerevisiae (Baker's yeast)
Length = 134
Score = 72.9 bits (171), Expect = 4e-12
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKKXGPGA 386
K ITPRHLQLAIRGD+ELDSLI+ATIA GGV+PHI+K+L+ K G+
Sbjct: 85 KRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKKGS 132
>UniRef50_P48003 Cluster: Histone H2A.Z; n=7; Eukaryota|Rep: Histone
H2A.Z - Schizosaccharomyces pombe (Fission yeast)
Length = 171
Score = 71.3 bits (167), Expect = 1e-11
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLI 410
K ITPRHLQLAIRGDEELD+LI+ATIA GGV+PHI+K L+
Sbjct: 118 KRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>UniRef50_Q4QEG6 Cluster: Histone H2A, putative; n=7;
Trypanosomatidae|Rep: Histone H2A, putative - Leishmania
major
Length = 177
Score = 60.1 bits (139), Expect = 3e-08
Identities = 25/37 (67%), Positives = 33/37 (89%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSL 413
I PRHL LAIRGDEEL+ ++KATI+ GGV+P++HK+L
Sbjct: 128 IKPRHLLLAIRGDEELNQVVKATISRGGVVPNVHKAL 164
>UniRef50_A3CI01 Cluster: Histone H2A; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Histone H2A - Oryza sativa subsp.
japonica (Rice)
Length = 115
Score = 58.4 bits (135), Expect = 1e-07
Identities = 27/44 (61%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIKA-TIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ A TIA GGV+P+IH++L+ KK G
Sbjct: 59 IVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 102
>UniRef50_A3CGY8 Cluster: Histone H2A; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Histone H2A - Oryza sativa subsp.
japonica (Rice)
Length = 158
Score = 57.6 bits (133), Expect = 2e-07
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 103 IVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 146
>UniRef50_O75367 Cluster: Core histone macro-H2A.1; n=179;
Eukaryota|Rep: Core histone macro-H2A.1 - Homo sapiens
(Human)
Length = 372
Score = 56.4 bits (130), Expect = 4e-07
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKKXG 395
+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK G
Sbjct: 76 VTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119
>UniRef50_Q9P0M6 Cluster: Core histone macro-H2A.2; n=74;
Eukaryota|Rep: Core histone macro-H2A.2 - Homo sapiens
(Human)
Length = 372
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKKXG 395
I PRH+ LA+ DEEL+ L+K TIA GGV+P IH L+ KK G
Sbjct: 76 IAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRG 119
>UniRef50_Q6FI13 Cluster: Histone H2A type 2-A; n=268;
Eukaryota|Rep: Histone H2A type 2-A - Homo sapiens
(Human)
Length = 130
Score = 53.6 bits (123), Expect = 3e-06
Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKK 401
I PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 79 IIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>UniRef50_Q54LA5 Cluster: Histone H2A; n=1; Dictyostelium discoideum
AX4|Rep: Histone H2A - Dictyostelium discoideum AX4
Length = 143
Score = 52.8 bits (121), Expect = 5e-06
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIK--ATIAXGGVIPHIHKSLIGKKXGPGAP 383
+ I+PRHL LAI+ DEELD+LI+ TIA GGVIP+IH+ L + P P
Sbjct: 84 RRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVLKKVEQKPTHP 134
>UniRef50_P16104 Cluster: Histone H2A.x; n=12; Eukaryota|Rep:
Histone H2A.x - Homo sapiens (Human)
Length = 143
Score = 52.8 bits (121), Expect = 5e-06
Identities = 30/52 (57%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKX----GPGAP 383
I PRHLQLAIR DEEL+ L+ TIA GGV+P+I L+ KK GP AP
Sbjct: 79 IIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKAP 130
>UniRef50_UPI0000DA3FD0 Cluster: PREDICTED: similar to Histone H2A
type 1; n=2; Euarchontoglires|Rep: PREDICTED: similar to
Histone H2A type 1 - Rattus norvegicus
Length = 177
Score = 52.4 bits (120), Expect = 6e-06
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKK 401
I PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 84 IIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 125
>UniRef50_P84051 Cluster: Histone H2A; n=60; Protostomia|Rep:
Histone H2A - Drosophila melanogaster (Fruit fly)
Length = 124
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/42 (61%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRHLQLAIR DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 78 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
>UniRef50_P35061 Cluster: Histone H2A; n=31; Eumetazoa|Rep: Histone
H2A - Acropora formosa (Staghorn coral)
Length = 125
Score = 50.8 bits (116), Expect = 2e-05
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRHLQLA+R DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 78 IIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKK 119
>UniRef50_Q4SU60 Cluster: Histone H2A; n=2; Tetraodontidae|Rep:
Histone H2A - Tetraodon nigroviridis (Green puffer)
Length = 258
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKK 401
I PRHLQLA+R DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 70 IIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 111
>UniRef50_Q86EU0 Cluster: Histone H2A; n=1; Schistosoma
japonicum|Rep: Histone H2A - Schistosoma japonicum
(Blood fluke)
Length = 156
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
K ITPRH+ L +R D EL+ L+K I+ GGV+P IH +L+ +K
Sbjct: 77 KTITPRHIMLGVRNDAELNELLKHVHISHGGVLPCIHPALLKRK 120
>UniRef50_A7R6L6 Cluster: Chromosome undetermined scaffold_1333,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_1333, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 195
Score = 46.4 bits (105), Expect = 4e-04
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 133 IIPRHVLLAVRNDEELGKLLAGVTIARGGVLPNINHILLPKK 174
>UniRef50_UPI0000498F6A Cluster: histone H2A; n=2; Entamoeba
histolytica HM-1:IMSS|Rep: histone H2A - Entamoeba
histolytica HM-1:IMSS
Length = 159
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGK 404
ITPRH+QLA+R D EL+ L+K TI+ GGV P++ ++ K
Sbjct: 108 ITPRHIQLAVRSDLELNDLLKDVTISYGGVFPNVPTAVNSK 148
>UniRef50_Q23429 Cluster: Histone H2A; n=1; Caenorhabditis
elegans|Rep: Histone H2A - Caenorhabditis elegans
Length = 145
Score = 44.8 bits (101), Expect = 0.001
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIP-HIHKSLIGKK 401
+TPRHL LAI GD+E L+ K T+ GGV P IH SL+ KK
Sbjct: 92 VTPRHLHLAIYGDQETAQLLDKVTLPQGGVTPMPIHPSLLPKK 134
>UniRef50_A2YNE9 Cluster: Histone H2A; n=1; Oryza sativa (indica
cultivar-group)|Rep: Histone H2A - Oryza sativa subsp.
indica (Rice)
Length = 180
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRH+ LAIR D+EL L+ TIA GGV+P+I+ L+ K+
Sbjct: 94 IIPRHVLLAIRNDDELGKLLAGVTIAHGGVLPNINPVLLPKE 135
>UniRef50_P35066 Cluster: Histone H2A; n=40; Trypanosomatidae|Rep:
Histone H2A - Trypanosoma cruzi
Length = 135
Score = 41.1 bits (92), Expect = 0.016
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGK 404
K +TPR + LA+R D++L L+K T++ GGV+P ++K+L K
Sbjct: 80 KRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKK 122
>UniRef50_Q54WG6 Cluster: Histone H2A; n=1; Dictyostelium discoideum
AX4|Rep: Histone H2A - Dictyostelium discoideum AX4
Length = 154
Score = 38.3 bits (85), Expect = 0.11
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKKXGP 392
ITP+H+ A+ D EL+SL + TIA GGV+P +S KK P
Sbjct: 98 ITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKKP 142
>UniRef50_Q54HW2 Cluster: Histone H2A domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: Histone H2A
domain-containing protein - Dictyostelium discoideum AX4
Length = 260
Score = 37.9 bits (84), Expect = 0.14
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIG--KKXG 395
ITP+H+ L+I D EL+ L+K TIA GGV IH L+ KK G
Sbjct: 194 ITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKKG 239
>UniRef50_Q9LD75 Cluster: Histone H2A.2; n=1; Lilium
longiflorum|Rep: Histone H2A.2 - Lilium longiflorum
(Trumpet lily)
Length = 128
Score = 37.5 bits (83), Expect = 0.19
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRH+ LA+R D E++ L TI+ GV+P K L +K
Sbjct: 79 IKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120
>UniRef50_A4VD85 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 219
Score = 33.5 bits (73), Expect = 3.1
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 426 MCGMTPPXAIVAF-MRLSNSSSPLIASCKCRGVI 524
M G TPP AIV M L NSSS LIA+ C G I
Sbjct: 4 MLGKTPPSAIVVLAMSLFNSSSFLIANKICLGTI 37
>UniRef50_UPI0000E49FF4 Cluster: PREDICTED: similar to KIAA0467
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to KIAA0467 protein -
Strongylocentrotus purpuratus
Length = 1717
Score = 33.1 bits (72), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 177 SPYSLHISITYSYIFSPDQQFQSHH 251
S Y H+ SY+F+PD FQSH+
Sbjct: 1264 SAYDFHLRTIQSYLFNPDMGFQSHY 1288
>UniRef50_UPI0001554FEE Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 146
Score = 32.7 bits (71), Expect = 5.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIKATIAXGGV-IPHIHKSLI 410
I P HL+ A+R D ELD L ++ G +P +H +L+
Sbjct: 85 IAPVHLRQAVRDDPELDRLFGDIVSSPGAGLPRLHSALL 123
>UniRef50_A0D801 Cluster: Chromosome undetermined scaffold_40, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_40,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1026
Score = 32.3 bits (70), Expect = 7.2
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 108 IQNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYIFSPDQQF 239
IQN KC + +Q I+ +S F S LH +I Y+Y F D +F
Sbjct: 225 IQN-KC-VGQQSCEFIIRESLFDSCPDLHSNIVYAYSFCQDSEF 266
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,243,387
Number of Sequences: 1657284
Number of extensions: 8943781
Number of successful extensions: 17178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17157
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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