Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_D18
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    71   8e-14
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    57   1e-09
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    52   5e-08
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   7.0  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.3  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 32/40 (80%), Positives = 37/40 (92%)
 Frame = -3

Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLI 410
           K ITPRHLQLAIRGDEELD+LI+ATIA GGV+PHI+K L+
Sbjct: 118 KRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 28/48 (58%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
 Frame = -3

Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXGPGAP 383
           I PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 80  IIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = -3

Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
           I PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 80  IIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXG 443
           K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 76  KPLTPDNICMGVGSDEIIDSLIRISCIPG 104


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 404 EXRSWCTRLILSYE 363
           + R WCT+L+LS E
Sbjct: 623 DLRQWCTKLVLSKE 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,460
Number of Sequences: 5004
Number of extensions: 39266
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)