Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D18
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0018 + 14164103-14164225,14164596-14164892 79 2e-15
03_01_0433 + 3353255-3353374,3353532-3353828 79 2e-15
12_02_0605 - 20924385-20924606,20924705-20924899 58 4e-09
08_02_0735 + 20564451-20564525,20566346-20566561 57 8e-09
12_02_0151 - 14468480-14468698,14468902-14469090 57 1e-08
07_03_0790 + 21536389-21536577,21536854-21537072 57 1e-08
07_03_0791 + 21539069-21539257,21539493-21539711 56 2e-08
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 55 4e-08
03_05_0949 + 29089293-29089487,29089592-29089810 52 2e-07
05_05_0119 - 22512228-22512500,22512577-22512795 50 1e-06
05_01_0107 + 706936-707202,707231-707485 47 1e-05
03_02_0562 - 9469263-9469517,9469619-9469843 47 1e-05
11_01_0426 + 3271324-3271377,3272114-3272227,3272475-3272588,327... 30 1.3
09_02_0555 - 10588685-10592038 29 1.8
01_07_0278 - 42440405-42440515,42440765-42440830,42440995-424410... 29 3.1
08_01_0775 - 7531397-7531564,7531590-7532771 28 5.4
02_05_1354 - 35872352-35872429,35872590-35872667,35872826-35873098 28 5.4
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 27 9.4
03_02_1029 - 13488535-13493037 27 9.4
02_01_0652 - 4848174-4848194,4849121-4849693,4849816-4849955,485... 27 9.4
>10_08_0018 + 14164103-14164225,14164596-14164892
Length = 139
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K ITPRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSLI K
Sbjct: 94 KRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 135
>03_01_0433 + 3353255-3353374,3353532-3353828
Length = 138
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K ITPRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSLI K
Sbjct: 93 KRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 134
>12_02_0605 - 20924385-20924606,20924705-20924899
Length = 138
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/44 (61%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIKA-TIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ A TIA GGV+P+IH++L+ KK G
Sbjct: 82 IVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125
>08_02_0735 + 20564451-20564525,20566346-20566561
Length = 96
Score = 57.2 bits (132), Expect = 8e-09
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIKA-TIAXGGVIPHIHKSLIGKKXGPGA 386
I PRH+QLA+R DEEL L+ A TIA GGV+P+IH L+ KK G A
Sbjct: 42 IVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSA 88
>12_02_0151 - 14468480-14468698,14468902-14469090
Length = 135
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 80 IVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 123
>07_03_0790 + 21536389-21536577,21536854-21537072
Length = 135
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 80 IVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 123
>07_03_0791 + 21539069-21539257,21539493-21539711
Length = 135
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXGPGA 386
I PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G A
Sbjct: 80 IVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSA 126
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVI 434
K ITPRHLQLAIRGDEELD+LIK TIA GGV+
Sbjct: 117 KRITPRHLQLAIRGDEELDTLIKGTIA-GGVV 147
>03_05_0949 + 29089293-29089487,29089592-29089810
Length = 137
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ TIA GGV+P+I + L+ KK G
Sbjct: 82 IVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGG 125
>05_05_0119 - 22512228-22512500,22512577-22512795
Length = 163
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKKXGPGA 386
I PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK G A
Sbjct: 90 IIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAA 136
>05_01_0107 + 706936-707202,707231-707485
Length = 173
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 106 IIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 147
>03_02_0562 - 9469263-9469517,9469619-9469843
Length = 159
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 92 IIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133
>11_01_0426 +
3271324-3271377,3272114-3272227,3272475-3272588,
3272677-3272834,3273067-3273157,3273668-3273778
Length = 213
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 514 RHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKK 401
+ + L R DEELD L + GGV IH L+G+K
Sbjct: 141 QQMLLIKRQDEELDELSASVQRIGGVGLTIHDELVGQK 178
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 99 TSYIQNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYI 218
T + +N C + ++L +++Q +SPYS+H T Y+
Sbjct: 668 TLWNENRVCVPDNRELKQLILQEAHESPYSIHSGSTKMYL 707
>01_07_0278 -
42440405-42440515,42440765-42440830,42440995-42441085,
42441342-42441496,42441823-42442044,42442097-42442210,
42442833-42442912,42443289-42443505
Length = 351
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 514 RHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKK 401
R L L + DEELD L ++ GGV IH+ L G++
Sbjct: 257 RQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQE 294
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 111 QNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYI 218
+N C + ++L +++Q +SPYS+H T Y+
Sbjct: 351 ENRVCVPDDRELKQLILQEAHESPYSIHPGSTKMYL 386
>02_05_1354 - 35872352-35872429,35872590-35872667,35872826-35873098
Length = 142
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 511 HLQLAIRGDEELDSLIKATIAXGG 440
HL L + G EELD L++ I GG
Sbjct: 37 HLSLGVGGAEELDLLLQVGIGGGG 60
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIKATIAXG 443
+T R I+ D E+D+L+KAT+ G
Sbjct: 285 LTRRERNAGIKPDPEIDALMKATVVEG 311
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 123 CPMNKQKLSLILIQSYFKSPYSLHISITYSYI 218
C + ++L +++Q +SPYS+H T Y+
Sbjct: 1059 CVPDSRELKQLILQEAHESPYSIHPGSTKMYL 1090
>02_01_0652 -
4848174-4848194,4849121-4849693,4849816-4849955,
4850072-4850359,4850458-4850505,4850605-4851106,
4851217-4851326,4851620-4851916,4852025-4852124
Length = 692
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 87 YAYPTSYIQNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYIFSPDQQF 239
Y +P Q + P + K + L F S ++ +S++Y+Y F P ++
Sbjct: 260 YIWPLGKDQYLRLPTSLVKDAHALGLEVFASGFANDVSMSYNYSFDPSAEY 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,367
Number of Sequences: 37544
Number of extensions: 237809
Number of successful extensions: 463
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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