Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_D18
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 79 2e-15
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 79 2e-15
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 79 2e-15
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 79 2e-15
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 77 6e-15
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 66 2e-11
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 57 6e-09
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 57 6e-09
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 57 6e-09
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 57 6e-09
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 56 2e-08
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 56 2e-08
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 49 2e-06
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 49 2e-06
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 48 5e-06
At3g23295.1 68416.m02938 expressed protein 28 3.4
At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen... 28 3.4
At5g16660.1 68418.m01950 expressed protein 27 6.0
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K ITPRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSLI K
Sbjct: 91 KRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K ITPRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSL+ K
Sbjct: 91 KRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K ITPRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSL+ K
Sbjct: 91 KRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K ITPRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSL+ K
Sbjct: 91 KRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 77.4 bits (182), Expect = 6e-15
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGK 404
K I+PRHLQLAIRGDEELD+LIK TIA GGVIPHIHKSLI K
Sbjct: 89 KRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -3
Query: 529 KXITPRHLQLAIRGDEELDSLIKATIAXGGVIPHIH 422
K ITPRHLQLAIRGDEELD+LIK TI G VIPHIH
Sbjct: 83 KRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 57.2 bits (132), Expect = 6e-09
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXGPGAP 383
I PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 80 IVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 57.2 bits (132), Expect = 6e-09
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXGPGAP 383
I PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 80 IVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKP 127
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 57.2 bits (132), Expect = 6e-09
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXGPGAP 383
I PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 80 IVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKP 127
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 57.2 bits (132), Expect = 6e-09
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXGPGAP 383
I PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 80 IVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 86 IVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLI-KATIAXGGVIPHIHKSLIGKKXG 395
I PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 86 IVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRH+ LA+R DEEL +L+K TIA GGV+P+I+ L+ KK
Sbjct: 88 IIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKK 129
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 88 IIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 523 ITPRHLQLAIRGDEELDSLIK-ATIAXGGVIPHIHKSLIGKK 401
I PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 89 INPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At3g23295.1 68416.m02938 expressed protein
Length = 74
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 174 KSPYSLHIS-ITYSYIFSPDQQFQSHHCPLH 263
K + L IS T++Y+ S D Q HH P+H
Sbjct: 5 KRHFDLCISRFTHTYVRSSDTQTHQHHVPVH 35
>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
{Arabidopsis thaliana}; identical to cDNA syntaxin of
plants 61 (SYP61) GI:16041649
Length = 245
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 514 RHLQLAIRGDEELDSLIKATIAXGGVIPHIHKSLIGKK 401
R + L + DEELD L K+ GGV IH L+ ++
Sbjct: 151 RQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQE 188
>At5g16660.1 68418.m01950 expressed protein
Length = 168
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 311 LCRCVTTAGIKCSIILSSHNLKLNGCTRTXFLSN 412
+ C+ TA + S + SH +K NG + T LS+
Sbjct: 1 MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSS 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,995
Number of Sequences: 28952
Number of extensions: 202420
Number of successful extensions: 377
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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